Gene detail

Gene detail information of Glyur000215s00017034.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02230.1	8.00E-96	reversibly glycosylated polypeptide 1
NR	XP_006856400.1	1.70E-119	hypothetical protein AMTR_s00047p00209120 [Amborella trichopoda]
Swissprot	tr\|O04300\|UPTG_PEA	4.00E-119	Alpha-1,4-glucan-protein synthase [UDP-forming]
trEMBL	tr\|M5XB89\|M5XB89_PRUPE	6.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23372.1}

Sequence

Transcript Sequence

>Glyur000215s00017034.1
ATGCAATGCATCTCACACACACGCATCACAAGTAGCACGTGCCAAGTCACATCCAGTTTNAAATACAAAAACCCCTCATCAAGCCCCCCAAACAACAAACACCATCCTCGTCCAACAAGAGAAGACCCTTATCTTTCTCGAAATCAATCAACCATGTCGTCGTCGGCAACACCGATTCTGAAGGATGAGTTAGACATAGTGATCCCAACGATAAGGAACCTTGACTTCTTAGAGATGTGGAGGCCATTCTTCGAACCGTACCACCTCATCATCGTACAGGACGGTGACCCTTCTAAGACCATTAAAGTCCCCGAAGGGTTCGATTACGAGCTCTACAACCGCAACGACATTAACCGAATCCTCGGNCCCAGGTCCAACTGCATTTCCTTCAAGGATTCTGCTTGTCGCTGCTTCGGCTTCATGGTCTCCAAAAAGAAGTACATCTTCACCATTGACGATGACTGCTTCGTTGCAAAAGATCCATCTGGCGAAGAAATTAATGCCCTGCAGCAGCACATTAAGAACCTTCTGGCACCATCAACCCCATTTTTCTTCAACACCCTCTATGACCCATACAGAGAAGGTGCGGATTTTGTTCGTGGGTATCCATTCAGTCTTCGTGAGGGTGTCCCAACAGCTGTNTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCATAAGTGATCATTTGGGATGGGGAGTGAAGACAGGTTTGCCTTATATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAAGAGTACAAGGGAATTTACTGGCAGGAGGAGCTGATCCCATTTTTCCAATCCGTTTCTCTCCCAAAGGATTGCACAACTGTTCAGAAATGCTACATTGAGCTATCCAAGCAAGTTAGGGCAAAACTTGGAGGGGTTGATGAGTATTTCAACAAGCTTGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAACTTAACCCATCTGGGGAAAAATCTGAGGCATTGCCCAATGGTCCTGCAAAGTAGATTCTTCATATATGATATGTGCGGCTCTAGGGATAAATTATTGAGCAGGGCAGGAACAGAGGATATGGTTGTACTTTNTCATTTTACTTTGTTTTCTTAGAACAATAAGATTTGAGTGGCTCTTCATTATATTATTTTATATATTTTCTTCAGGTCGGAATGTAGCTTATTATTATTAGACTATGTTTAACTTCAAATTTAATAGTGAGATTATTGCTTTTGGGAATGTCTTATCTTATGTGATTGTTATTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00215	220469	223176	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT75

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13379	RGP, UTM	EC:2.4.1.- 5.4.99.30	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

molecular_function
GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000215s00017034.1	PF03214.8	RGP	58	232	6.70E-91
Glyur000215s00017034.1	PF03214.8	RGP	232	330	1.20E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	339.333
SRR1783600	control	341.452
SRR1783602	moderate drought stress	118.820
SRR1811619	moderate drought stress	119.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	115.162
DRR006520	Root Summer glycyrrhizin high producing strain	113.570
DRR006521	Root Winter glycyrrhizin high producing strain	173.034
DRR006522	Root Winter glycyrrhizin high producing strain	166.550
DRR006523	Root Summer glycyrrhizin low producing strain	144.385
DRR006524	Root Summer glycyrrhizin low producing strain	145.011
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.176
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	136.807
SRR2868004	Drought Stress (root)	78.464
SRR2967015	Control (root)	76.089

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.966
SRR9715740	Leaf	51.448
SRR9715741	Leaf	77.547
SRR9715739	Root	123.321
SRR9715742	Root	145.627
SRR9715743	Root	138.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	229.222
SRR8749028	MeJA induced 9h	189.229
SRR8749029	MeJA induced 9h	169.547
SRR8749030	Uninduced	101.860
SRR8749031	Uninduced	68.457
SRR8749032	Uninduced	86.398

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	126.921
SRR8400027	Control - Root	139.018