Gene detail

Gene detail information of Glyur000215s00017032

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15630.1	8.00E-170	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
NR	AFK33956.1	0	unknown [Lotus japonicus]
Swissprot	tr\|Q9LFW3\|COBL4_ARATH	0	COBRA-like protein 4 (Precursor)
trEMBL	tr\|I3S114\|I3S114_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK33956.1}

Sequence

Transcript Sequence

>Glyur000215s00017032.1
ATGGAATTTGATAATGGTAAACAGCTGCGAAGCTGCGCATTTCGAGAGCTGAAATGGGATATCATGTCCTGGACTTCAGATGGTTATATGGCCACCGTAACATTGTTTAACTTTCAACTGTACCGGAATATTATGAACCCTGGGTGGACTTTAGGATGGACATGGGCAAAGAAAGAGATCATATGGACCNTGATGGGAGCTCAAGCAACAGAACAAGGAGACTGTTCCAAGTTCAAGTTGAAGATTCCTCANAGCTGCAAGAGGAGCCCTCAAGTGGTTGATTTGCTACCTGGAGCTCCTTTCAACATGCAATACACCAACTGCTGCAAGGGGGGTGTGCTAACATCTTGGGGGCAAGACCCTTCAGGTTCAATCTCAGCATTTCAGATGGGTGTGGGTCTCTCTGGCACCACTAACAAGACAGTGAAACTCCCCCAGAACTTCAAGTTGATGGGACCAGGACCAGGATATTCTTGTGGCCCTGCCAAGAAGGTTCCATCCACTGTCATCCTCACAGATGACCTGTCCTGGAACGTGACATGTACTTATTCACAGTTTCTTGCCTCCAAGAACCCAAGTTGTTGTGTTTCTTTGTCATCTTTCTACAATGACAAAGTCACAGCTTGCCCAGCTTGTGCTTGTGGTTGTCAGAGTAATAATACATGCGTAACGAGCGATTCAAAGATCCTACAAGAGGATGATAGAAAGAAGACTAAGAAGACAGATATCACACCAAAACCATTGTTGCGATGCACACGCCACCTGTGTCATGTCCGGGTGCACTGGCATATAGAAGACAACTACAAGGACTATTGGCGTGTCAAGATTGCCATCGTCAACTTCGACTATAGAATGAATTACACACAATGGAGTCTTGTTGTGCAACACCCCAATCTCAACAATGTCACCCAAGTCTATAGCTTTGAATACATCCCACTTCTTCCCTATCAATCCATAAATGACACAGGAATGTTCTATGGTTTGAAATATTACAATGATCTATTAATGGAAGCAGGGCCTAAAGGGAATGTCCAGTCTGAGTTGCTTATGAAGAAGGACAAAGACACATTTACCCTCAAGCAGGGATGGGCATTTCCTAGAAGGGTCTACTTCAATGGCGATGAATGCATGCTGCCACCTCCTGATTCATACCCTTTCTTGCCAAACTCTGCTCATAGACTACCAATAACAAGTGTTGTATCCATGGCAGCCTATGTGATTTTTGCATCATTTTTCCATTTGGTTGTGACTCTTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00215	208147	211564	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000215s00017032.1	PF04833.10	COBRA	29	185	1.00E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.325
SRR1783600	control	9.395
SRR1783602	moderate drought stress	13.842
SRR1811619	moderate drought stress	13.968

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.085
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.057
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.186
DRR006524	Root Summer glycyrrhizin low producing strain	0.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.553
SRR2868004	Drought Stress (root)	28.543
SRR2967015	Control (root)	16.575

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.059
SRR9715740	Leaf	0.617
SRR9715741	Leaf	0.087
SRR9715739	Root	2.686
SRR9715742	Root	16.407
SRR9715743	Root	13.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.234
SRR8749031	Uninduced	0.121
SRR8749032	Uninduced	0.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.284
SRR8400027	Control - Root	81.961