Gene detail

Gene detail information of Glyur000215s00017031

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60920.1	5.00E-124	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
NR	XP_002514629.1	0	Protein COBRA precursor, putative [Ricinus communis]
Swissprot	tr\|Q94KT8\|COBRA_ARATH	2.00E-159	Protein COBRA (Precursor)
trEMBL	tr\|B9RLL0\|B9RLL0_RICCO	0	Protein COBRA, putative {ECO:0000313\|EMBL:EEF47735.1}

Sequence

Transcript Sequence

>Glyur000215s00017031.1
CAGATCTTCCCAACAGTGTTCTTTTTCTTTTCATTATTACATAATAAAGACAGTGATTTTACTTACATTAGAGGTACCAATTTTCATCACAAAACCAGTACTCCACTCTTTGCTTTGTCATGGAACAAGAGAGCTGAGAGGACTACACTACACCTCTTTTTGCTCTCTCTCTCTCCCTTTCTGGTGCAGATCTTGAAGTTGAGCTACTTTAATTGTTAGAGAAAATCTGCACCAAGAAATGGGGTCTATCTGGTTAACTACCATTGGATCTGTTGTACCTCGTGGTGGCTTGGTAGTTTTACTTGTGTTGCTGTTCTCTTGCTCCACATTCACTTCTACAGAAGCCTATGATCCGCTTGATCCAACTGGAAATATTACAATCAAATGGGATGTCATTAACTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTTCAACTTTCAACAATACCGCCATATTCAGGCGCCCGGATGGACAATGGGGTGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGNTGGGAGGACAAACCACAGAGCAAGGAGACTGTTCAAAGTTCAAAGCAGGCATCCCACATTGTTGTAAGAAGGACCCAACAGTAGTGGATTTGCTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTCTTGAATTCATGGGCTCAGGACCCAGACAATGCAATAAGCTCTTTCCAGATTAGTGTTGGTTCTGCTGGAACGACTAACAAAACAGTCAAGCTGCCAAGAAATTTCACCCTCAAAGCACCAGGACCTGGTTATACTTGTGGTCCTGCAAAAATTGTCAGACCAACTCAGTATATTACCAATGACAAGAGGAGAATCACACAAGCCTTGATGACCTGGAATGTTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAACTTGTTGTGTTTCCCTCTCATCCTTCTATAATGAAACAATAGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGATCATGGCAGCTGTGTAGAACCAAACTCCCCACATTTAGCTTCAGTTGTATCATCATCATCAAGCAATACACCTCTAGTGCAGTGTACCAATGATACAGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTACAGCTGGACCCCTTGGTAATGTGCAGTCAGAGATCTTATTTAGGAAGGACAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTACTTCAATGGGGATAACTGTGTCATGCCTCCTCCTGATGCCTACCCTTGGCTACCAAATGCAAGCTCAAAACTAGTCCTCTCTTTACTAAGTGCAGTCATAGCCAGTTTAGCTTCTTTCTTAATCTTATTGAATCAATCATAGAGATAACTATCTCTGTGGGGAAATGAAGGTGCCATCTACACTTTATGAAAGTCAACCCCATCATGAAAAATGCACAAGAGCTGTCAATGAAGAAGCAATAAAAAAGTGATGCAGGTGCATAAATGCTTGCCACAAGAATTCTGTCCTGTTATTTACTTTGGGGTTTGATTTTTACCTCCATTTATGTAACATATATTTCCTATTATTGCGCATTGTATAATTATTTATTTATTTATAGTTACATGCTTGGATGATTATTTTTTCCAATTATGGAGTATCCTATTTATTTGTCGGTGAATACAAGCTGAAATTCTAGGTAGCACTTTGTTGTTGCTAAGATTGGAAATGTCTTTAAAACTCTGCACGAATGGTTGAATTGCTAGTGTTCATGGCAAGATCAAATGCTCAAATTGGCGTGAACACTTTGGCAGAGTAGTTATAAGGAATAGAGCACGTTGGGGAATGTATAACTCTTGTAAGCATTGCGGACAGCTAAGATGGTCTCTAAGTAAGAAAGGGTGGATGGTTTTGAAAGCTAGTAATGTGTGCCTTAAGAAGAATGTTCTTTTGAAAAGAAAAAAAAAGAAGAATGTTCTAGAATGATGTGAAGTCTGTCATGTGAAGTTTTGATGCCTCCGAGCTGACCCAATCTCAAGGTGGATCTTGGATAACCCGACCCACTTGAGTGTGGTGCGGGTTGGACCACACTTTTGGACGAGGTCGAAACACACTTCTTTCCCTTCTCAAGTCATTTGTTAACCATTTACACTCATTTTGTATTTTGGAAACCCCAAATAGGGTTTGAATATAAAAAGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00215	203067	207918	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000215s00017031.1	PF04833.10	COBRA	60	224	3.20E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	158.464
SRR1783600	control	159.521
SRR1783602	moderate drought stress	115.754
SRR1811619	moderate drought stress	115.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.905
DRR006520	Root Summer glycyrrhizin high producing strain	59.524
DRR006521	Root Winter glycyrrhizin high producing strain	160.424
DRR006522	Root Winter glycyrrhizin high producing strain	157.314
DRR006523	Root Summer glycyrrhizin low producing strain	38.162
DRR006524	Root Summer glycyrrhizin low producing strain	39.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.448
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.340

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.055
SRR2868004	Drought Stress (root)	23.004
SRR2967015	Control (root)	40.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.032
SRR9715740	Leaf	1.151
SRR9715741	Leaf	1.968
SRR9715739	Root	52.323
SRR9715742	Root	50.300
SRR9715743	Root	48.092

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.583
SRR8749028	MeJA induced 9h	9.799
SRR8749029	MeJA induced 9h	6.849
SRR8749030	Uninduced	1.765
SRR8749031	Uninduced	0.345
SRR8749032	Uninduced	1.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.220
SRR8400027	Control - Root	101.267