Gene detail

Gene detail information of Glyur000215s00017027.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74120.1	1.00E-109	Mitochondrial transcription termination factor family protein
NR	XP_004488436.1	0	PREDICTED: uncharacterized protein LOC101513737 [Cicer arietinum]
trEMBL	tr\|A0A072V7X6\|A0A072V7X6_MEDTR	0	Transcription termination factor family protein {ECO:0000313\|EMBL:KEH38164.1}

Sequence

Transcript Sequence

>Glyur000215s00017027.1
ATGGGGTTGGGGGCAGCANCGCCATGTAGAAGAAACGTGCTTATTCTCCTTAAGCGTTTGGCTTTCTGCACCATTTCCTCCCAATCTCACCACAACAACACCAAACAGAGTTCATCCTCCAATCTCTACAGGAAACAGATTTCCCTCGCCAATCTCTTCAACAGCTACGGTTTCCCTTCCTCCCACCTTCATTCCTTTCTCTCCCAGAATCGCTTCCTCCTCGATTCCGACCCTTCTGAGCTTCAGAAATCCCTCGCCACCCTCTTTTCCTTCCGAATTCCACAGAATACCCTCGTTTCCCTCATTCGCGATTGCCCCGGTGTATTGGAACCCCGCTTTCTCCACAACTGGGAAACCGGTTTCCCCGAGCTCAAATCCCGCGTTCCAAACCTTTCCCCCTTGGTGCTCGCGAACCTTCTGCAATGTTCTAGAAGGTTCCTTTTAGACCCCGTTGAGCTTTCCCGTAAGGTCGAGGTTCTCAGGGGCTTATTAGGGTTTTCCGGCAACGCCATGGTTAGGGTTTTGGAAGAGTTCCCCAGCGCGATCGCGATGAGCGAGAGCGAAATTGCTTCCGTGGTTGATTTTCTCGTGGAGCTTGGTGTCCCCAGGGGTGAGATTGATCGAGTTGTTCGCTGTTATCCTAGGGTTTTGGGATTTGGGGTTGAGAATAGGTTGAAGCCTTTGATTCAGGAGTTGAGGGGATTGGGATTCTCTCGCCGCGAGGTTAGTGCAGAGATTGCTAGGGAGCCGAGGATTCTAGGAATGGAGATTGGGGAATCCTCGCGGTGTTTGCGGTTGCTGGAGAGTTTGAAATGCAGGGAAGCAATCAAGGAGAGGATTTTCGGAGAGGGTGGTTTGCTTAAGGCTTGTTTCGGGGTGAAGCTGAGGGTGGATTGCTTGTGCGGTCACGGTTTGATTCGAAGGGATGCTTTGAAGGTGTTGTGGAAAGAACCAAGGTTGATCACCTATGAATTGGAGGACATTGAGAGGAAGATTGAGTTCTTAGTGCATAGGATGAACTATGGTGTGGATTGTTTGCCTGAGGTTCCTGAATACTTGGGTGTGAATTTTGAGAAGCAGATTGTTCCTAGGTACAATGTGATTGAGTATTTGAAGGCAAAAGGTGCACTTGGTTTTGAGGTTGGATTGAAGGACCTTATCAAGCCTACTAGGCTTAGATTTTACAATCTCTATGTCAAGCCCTACCCTGAGTGTGAGAAAATATATGGGAGATTTTCAGGGAATCTTNTTGAAGTTAAAAGCAAGCATCCAGCTGGGCTTTGGAAGCTCTTTAAACCACCAAAGTTCCCTGATACCGATGAAGATTTAAAGAACCTGAAGTCTTTCATGGACTCACTGGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00215	177467	178831	+

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000215s00017027.1	PF02536.9	mTERF	51	394	8.40E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.611
SRR1783600	control	5.730
SRR1783602	moderate drought stress	9.972
SRR1811619	moderate drought stress	9.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.333
DRR006520	Root Summer glycyrrhizin high producing strain	10.052
DRR006521	Root Winter glycyrrhizin high producing strain	6.520
DRR006522	Root Winter glycyrrhizin high producing strain	6.263
DRR006523	Root Summer glycyrrhizin low producing strain	7.121
DRR006524	Root Summer glycyrrhizin low producing strain	7.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.140
SRR2868004	Drought Stress (root)	13.460
SRR2967015	Control (root)	12.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.833
SRR9715740	Leaf	9.455
SRR9715741	Leaf	9.969
SRR9715739	Root	12.851
SRR9715742	Root	10.366
SRR9715743	Root	10.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.339
SRR8749028	MeJA induced 9h	13.446
SRR8749029	MeJA induced 9h	7.603
SRR8749030	Uninduced	10.603
SRR8749031	Uninduced	12.943
SRR8749032	Uninduced	10.962

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.230
SRR8400027	Control - Root	9.790