Gene detail

Gene detail information of Glyur000215s00017011

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	0	NB-ARC domain-containing disease resistance protein
NR	XP_004517302.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like [Cicer arietinum]
COG	YP_001660791.1	4.00E-12	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A072VHI8\|A0A072VHI8_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:KEH41277.1}

Sequence

Transcript Sequence

>Glyur000215s00017011.1
ATGGCCGTGACGGGGTTCACCGTCAACAACGCCGCATTGGATGACCTCCTCGCGAAGAACCCACTCTCCGATCTACAACTACTACGACCAGCCACACCAACCGAAACCCATTCACAGTTTGTACAAGACAAGGGGTTTCACACTTATTCACCTCTTGCATTTGTTGAAGACGCCATGGCCTTGGAAGTTGTGGGTGGAGCTTTGTTGGAAGCTGGTTTTGCTGTCTTGCTCAGAACGATATCTTCTNCTGCGGTGGTTGGCTTCTTTAAGAAGAGTCAGAGAGGTGGCATGTTGCTGGCGAGGTTGAAGTTCTCCTTGTTGTCTGTTGATCTTGTGCTCAAGGATGCAGAGGAAAAGNAAATGAGAAATGGAGCCGTGAAGGAGTGGATTGAGGAAGTTAGAGATGTTGTCTTTGATGCTGATGATCTAATAGATGAGATAAGTACTACTCATGCCAAGATAAGTGCTGCTGAGGTAATGAACCCCAACTCAACTGCTGTGAATTTGCATCATGGTAGAGAACTTGAACAGAAACTAGAAGATATTGTTCAAAGGTTAGACTTTATCATTAAACAGAAAGACATACTTGAACTGCAAACAGTTAAAGAAGTCAAAATCCCACCAAAGATACCAACTTCATCTGTAGTGGGAGCAAGTGATGTGTGCGGTAGGGATGATGATAAAGAGGCCTTAATTAAGTTGTTGTTCTCGGATGATGCTGATGGTGACTGCAATGTGAGTGTGATTCCCATAGTCGGTATGGGGGGAATTGGGAAAACCACCTTAGCTCAACTTGTATACAATGATGATAGGGTGCAAAAGGAATTTGATCTCAAAGCTTGGGTCCATGTATCTGAACTGTTTGATATTCTCAAGATTACAAAATCCCTTGTGGAAGAGATCATTTCATGCAGTTGCAGCATTGGAGACTTGAACTTACTCCAACAAGATTTGAAGAAAAGGTTGTTGAAGAAAAAGTTTCTATTCGTTTTAGATGATGTCTGGAATCAAAATTATATTAGATGGGAAACCTTGAAGAATCCATTTATGTACGGGGCGCCTGGGAGTAAGGTTATTGTAACTACACGAATTGCTCATGTCGCCTCAATCATGCAGACTGTTAATCCTTATCATCTTTCAGAGCTGTGTGATGATGATTCTTGGATGTTGTTTTCAAAACATGTATTTGGAAATGCAAATTCAAATGTCCATCCAACTGTAAGAAGAATTGGTAAAAGAATAGTTAAGAAGTGCAAAGGTTTGCCTTTGGCTGTGAAGACACTTGCTGGACTTCTGCGATCTAAAGATGATACACGGGAGTGGTATAAAGTACTCAACAGTGAGATATGNGATTTGCAAGATGATGAGAGTAACATTCTCCCGGATTTGAGATTAAGTTATCATTGTCTTCCGTCAAATGTAAAGAGATGTTTTGCATACTGTTCAATTTTTCCAAAAGATTATGAATTTGAGAAAGAGAATTTGATTCTGTTGTGGATGGCAGAAGGTTTGCTACAAAAATTGAGAAGACANGAGACAATTGAAGAAGCTGGAGATGAGACCTTTAATGAATTAGTGTCTAGATCGTTTTTTCAGCAATCAAAACGCAATAAGTCATGTTTTGTAATGCATCATCTTGTAAATGATTTAGCTCAATTTGTATCTGGAAAATTTTCTGTCAGAGTAGAAGGTAATTATGATGAAGTGGAGGAAAGTGCTCGATACTTGCTGCATTTGATTGCACATAAATTCCCTGCTGTGCGTTGGAGGGCTATTGGCAAAGCTAATAAGCTGCNAACCTTGATCGAACTAAGGTTGGTAGATAAATCTGTGAGCTTTATTGANGAGATCCCATGTGACTTGTTGATGAAGCTCAAGTATTTAAGGGTGTTATCTTTGGAAGGCATCTATCTGCAGGGGTTGCCTGATTCAATNAATGAATTAATACATCTTCGCTATCTAGATCTCTCTGGGGCTAAGATGCACATTTTGCGGAAAAGCATTGGCGAGTTGTACAATTTGCAAACTCTGAAACTAGTGGGATGTTCTAATCTACAAGAACTTCCTGTAGATATGCATAAGCTAGTTAACCTGCGTTACTTGGACATTACTGGTACTTGTTTGAAATGGATGCCATTGCATATGAGTGCATTGAGAAACCTACAAAAGCTGAGTGACTTTTATGTAGGAAAAGAATGTGGATCTTCGATTGGTGAGCTGGGAGAATTGTCTGATTTACACGGATCATTGTTCATTCATAACATTGAACATGTTAGCTATGGGGATTCTGGAAAGGCCAAGTTGAAGGAAAAGGAGTTTCTTGAAAAGTTAATTTTGGAATGGGGTGAGAATGGTGATACTGATGATTCACAGCATGAGAAAGATATACTGGACAGGTTACAACCCCATACAAATTTGAAGGAACTTGATATATATAACTATCTGGGGACAGAATTCCCAAATTGGGTGGGAGACTCTTCCTTCTGCAACTTGCTGTTTATGGAGCTCAAGGGTAGCAAATATTGTTGTAAATTACCCCCNCTTGGGCAACTTCCTTCATTGAAAGAGCTACGGATCGCAAATTTTGATGGATTGATGTGTGTGGGGACTGAGTTTTATGGGAATGAAACTTGTTCTTCNGCTTTAACTGAGAGCTTTAGTTCCCTAGAAACTCTTAGGATTGAGAACATGTCAGCATGGGAGAAATGGCATCCTAATGAGACCAGCAAAGCTTTTGCAGTACTTAAAGAACTTCACATTAGTAGTTGTCCCAGACTCACAGGGGATTTACCCATTAACCTTCCATCTTTGACATTATTTGTCATCAGAGACTGTGAGCAGCTCATTTCTTCACTACCAACAGCTTCTTCAGCGATGCGTGTGATAAACATTGACAACTGTGGGAACTTAAAATTNCCAACACGTGTAAATCAGCGCCACGAGTCACTCACATCCTTATACTTACACAATAGCTGTGACTCACTCGAGCTTTTGCCATTGGATTTCTTTCCCAACCTCAAGTCCCTGGATATTTCGAGTTGTAAAAATCTGAAAGCACTTACAGTAACCGAAAATGTGACGCCTCCTCCAATTCTTNCATCCTTGCATTCCTTGTCCATAAGTAACTGTCCAAAGTTGGCATCCTTTCCCACAGAAGGATTTTTAGCCCCAAAGCTTACATTGTTGAGTATTNACTACTGTGAGGAGCTCAAGTCCCTGCCACCAAAAACGCATCAGCACATGCCAAGCTTGATAGAACTCAAACTATGGAGATGTCCACAAATTCAGCCAATCGAGGATTGGCCCCATGATTTGAGATCAGTCAGCATCCGGAACTGTGACACACTCATTGCCCGCCAGTTAGAGTGGAACCAATCCAATCCCTTCCATTTCACAGACTTGACAATGGCTGGTGGAGCTTTCACCGTCAAATCTGCTGATTGCTACTCANCAAGTTTGATCCAACATTGTTCATGCCCATGCCCTGCATACAGATTAGAAGATAAAAGGGAAGGTGCACAGGTAATTTGGGGATATGTTGATAGAATATTGGGTCAACCATCATTGATCCGAGAGTTNTCCTGAGGGAAATACCCCTGGTCTAGCTAGCATGTTTTCTCGTGCCATGAGCTCCCTGTCTCGACGNAATGATCCACAATCTGCTTCAAGAAATGGAAATGGTTTTGGTGATGTAATTTTGTATCCTTCTCTTCATGAAAGAATTGAGCAGCTGGCATGTGCAACTACGAATACAAAAGCACATCAGGCACCATTCAGAAACATGCTTTTTTATGGCCCTCCAGGAACAGGAAAGACAATATAATGGTAGT

Protein Sequence

>Glyur000215s00017011.1
MAVTGFTVNNAALDDLLAKNPLSDLQLLRPATPTETHSQFVQDKGFHTYSPLAFVEDAMALEVVGGALLEAGFAVLLRTISSXAVVGFFKKSQRGGMLLARLKFSLLSVDLVLKDAEEKXMRNGAVKEWIEEVRDVVFDADDLIDEISTTHAKISAAEVMNPNSTAVNLHHGRELEQKLEDIVQRLDFIIKQKDILELQTVKEVKIPPKIPTSSVVGASDVCGRDDDKEALIKLLFSDDADGDCNVSVIPIVGMGGIGKTTLAQLVYNDDRVQKEFDLKAWVHVSELFDILKITKSLVEEIISCSCSIGDLNLLQQDLKKRLLKKKFLFVLDDVWNQNYIRWETLKNPFMYGAPGSKVIVTTRIAHVASIMQTVNPYHLSELCDDDSWMLFSKHVFGNANSNVHPTVRRIGKRIVKKCKGLPLAVKTLAGLLRSKDDTREWYKVLNSEIXDLQDDESNILPDLRLSYHCLPSNVKRCFAYCSIFPKDYEFEKENLILLWMAEGLLQKLRRXETIEEAGDETFNELVSRSFFQQSKRNKSCFVMHHLVNDLAQFVSGKFSVRVEGNYDEVEESARYLLHLIAHKFPAVRWRAIGKANKLXTLIELRLVDKSVSFIXEIPCDLLMKLKYLRVLSLEGIYLQGLPDSXNELIHLRYLDLSGAKMHILRKSIGELYNLQTLKLVGCSNLQELPVDMHKLVNLRYLDITGTCLKWMPLHMSALRNLQKLSDFYVGKECGSSIGELGELSDLHGSLFIHNIEHVSYGDSGKAKLKEKEFLEKLILEWGENGDTDDSQHEKDILDRLQPHTNLKELDIYNYLGTEFPNWVGDSSFCNLLFMELKGSKYCCKLPPLGQLPSLKELRIANFDGLMCVGTEFYGNETCSSALTESFSSLETLRIENMSAWEKWHPNETSKAFAVLKELHISSCPRLTGDLPINLPSLTLFVIRDCEQLISSLPTASSAMRVINIDNCGNLKXPTRVNQRHESLTSLYLHNSCDSLELLPLDFFPNLKSLDISSCKNLKALTVTENVTPPPILXSLHSLSISNCPKLASFPTEGFLAPKLTLLSIXYCEELKSLPPKTHQHMPSLIELKLWRCPQIQPIEDWPHDLRSVSIRNCDTLIARQLEWNQSNPFHFTDLTMAGGAFTVKSADCYSXSLIQHCSCPCPAYRLEDKREGAQVIWGYVDRILGQPSLIREXS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00215	61618	68375	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000215s00017011.1	PF00931.17	NB-ARC	224	506	2.00E-80
Glyur000215s00017011.1	PF13504.1	LRR_7	1004	1020	4.4

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.063
SRR1783600	control	3.070
SRR1783602	moderate drought stress	7.238
SRR1811619	moderate drought stress	7.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.595
DRR006520	Root Summer glycyrrhizin high producing strain	1.627
DRR006521	Root Winter glycyrrhizin high producing strain	2.908
DRR006522	Root Winter glycyrrhizin high producing strain	2.753
DRR006523	Root Summer glycyrrhizin low producing strain	0.862
DRR006524	Root Summer glycyrrhizin low producing strain	0.838
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.652
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.050
SRR2868004	Drought Stress (root)	3.199
SRR2967015	Control (root)	3.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.367
SRR9715740	Leaf	1.116
SRR9715741	Leaf	2.410
SRR9715739	Root	0.384
SRR9715742	Root	1.290
SRR9715743	Root	1.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.003
SRR8749028	MeJA induced 9h	1.022
SRR8749029	MeJA induced 9h	0.309
SRR8749030	Uninduced	0.770
SRR8749031	Uninduced	0.175
SRR8749032	Uninduced	0.101

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.538
SRR8400027	Control - Root	5.462