Gene detail information of Glyur000215s00017003.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 7.00E-92 | FAR1-related sequence 5 |
| NR | XP_008787110.1 | 0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 5.00E-108 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|A0A096QLC0|A0A096QLC0_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G048987_P03} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00215 | 6908 | 11012 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000215s00017003.1 | PF03101.10 | FAR1 | 32 | 120 | 1.40E-18 |
| Glyur000215s00017003.1 | PF10551.4 | MULE | 247 | 336 | 1.20E-24 |
| Glyur000215s00017003.1 | PF04434.12 | SWIM | 523 | 555 | 3.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.071 |
| SRR1783600 | control | 5.106 |
| SRR1783602 | moderate drought stress | 6.237 |
| SRR1811619 | moderate drought stress | 6.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.812 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.844 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.029 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.920 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.921 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.698 |
| SRR2868004 | Drought Stress (root) | 9.349 |
| SRR2967015 | Control (root) | 8.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.001 |
| SRR9715740 | Leaf | 2.990 |
| SRR9715741 | Leaf | 3.842 |
| SRR9715739 | Root | 0.402 |
| SRR9715742 | Root | 2.700 |
| SRR9715743 | Root | 3.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.356 |
| SRR8749028 | MeJA induced 9h | 7.064 |
| SRR8749029 | MeJA induced 9h | 3.776 |
| SRR8749030 | Uninduced | 3.024 |
| SRR8749031 | Uninduced | 1.311 |
| SRR8749032 | Uninduced | 1.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.424 |
| SRR8400027 | Control - Root | 8.808 |