Gene detail

Gene detail information of Glyur000214s00016038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21770.1	2.00E-154	Pseudouridine synthase family protein
NR	XP_003541622.2	0	PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Glycine max]
COG	NP_969184.1	4.00E-24	RNA pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9SVS0\|PUS6_ARATH	0	RNA pseudouridine synthase 6, chloroplastic (Precursor)
trEMBL	tr\|I1M124\|I1M124_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G27660.1}

Sequence

Transcript Sequence

>Glyur000214s00016038.1
CAATTTTCAAAACTCAAAACCCACCTCAACCCGATAAGTCAAGCTGTGACTGTGAAGGAGTCGTTCGGAATCGAAAAGACAAGATAGAGGATGGGTACGGTGGCGGTGGCATCAATGTTGTTCACCGGCGGCTGCCGGAGCTTCGCCGTGCCTGCTGCGGCGCGTGCGCTTCGCATCTCTCTTAACAAGCACCTCAACAAGCACGCGTTGAGTTGGCGTTGTTGGAGTTCACATNACAGTAACACTGCACTCGCCGGTGAAACTGCATCCTCAACAATCGACGCCGGAAGCTTAACCTCTACCTCTTCTTCCAATAGGAGGATCTGTCTTAGAATATATTTGCGAGGCTCTGGATCTTCCACCTTTGTAAGTGCGAATCATTACAATTTTACGAAGTTTGTTGCAGATCTGATCCAATTCGGAGCTGTATACTACGCTCTTGTTTGTCCACAGCCTCCCCCTAATGCTACTCCAGAGCAAATAAGGATATTCAAACAAGTAACGGAACCATCGGTTCTACGGAAAAGAGCTTCCATCAAAGGCAAAACCGTNCGAGAGGCACAGAAAACTTTCCGAGTAACTCATGTGGATCAATTTGTTGAACCAGGAACGTATTTGCGAGTGCACGTGCACCCCAAGCGCTTTCCTAGGTGCTATGAGATTGACTGGAGATCAAGGATCATAGCTGTGGAGGAATCGTATGTAGTTTTGGATAAACCTGCTGGTACTTCAGTAGGTGGGACTACTGACAACATTGAAGAAAGTTGTGTAACCTTTGCAACTCGTGCTTTGGGATTGACAACCCCTCTGATGACTACCCATCAGATTGATAATTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCTGTCTTTCATGGTAAAATCAGGTTCTACTACTTAGAAAGGCATGCTCGTACAAGGCATGAGCTGTTCGATCTTCATCATGATGGGGTTCAACTGTTTGGAAGAGTTTATTTCGCACCATTGAATGAGAAAAAAGTGAAGAAGCTCTATCTTGCTCTTGCAGCTTCTCCTTTACCAACTGGAATCTTTACCCACTATATGCGTCCTATTAACATGGCTCCTCGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCTTTGTCAACTTGAGGTCATGGACTGCAGAAAGGTTCCCTGGCCAACTACTGTTGTTCAAGATAAATATTGTGTTGATGACTGTGGGTGGCCTTCTCAAGATTATGCATATGAGTGTAAAATCAACCTTCTTACTGGTCGAACTCATCAGATTCGAGCTCAATTTGCTGCATGTAAGGCACCATTAATCGGTGATTCTATGTATATGCCGGCTGCAATTGCAGAGATGGTTAATCCTGGACTTANTCCATTTGGAAAATACAAGAAAGATTTCAGTAGGGAGAGTGAAAAAGAAATGGCTGTTATAAATTGGACCACACAACATGGAAAAGAGCCAAGTGTTGCAATTGGCCTTCAAGCTTGTCAAATTTCGTGGGATGATGACGAACACTTTTACAAAGCTGGTTTGCCTTGGTGGAGGTGTTAAAATGCTGGATATTTGTGCTTGAGTTGAACTGTATATAATGTTTAATGGAGGATAGCGATGGCAGGGNGTGTCAAGCAGCGGCAGTGGAGAGTGTTCAGTAGTGGCAGTGGTGGAGGGTGCTGTGATGTGATGGCAGGTAGTTTTAGATTTCTAAGCATAAGTTAAGACGTTTTAGTTGATATTTTAAACACATTTTCTCTCCCTTCCAAATCTCACTAATATTGGATGGAGTCAAAATTGAGAGAGAAGGGATTTTGACCCGTTCCATTCTCCTCCCCTTCCCCCAAAATTTTGATCCAAACATTAATATCCCTTCTCTTCATTTCCCCCCAACCANA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	224139	228565	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0009451 RNA modification

molecular_function

GO:0003723 RNA binding

GO:0009982 pseudouridine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016038.1	PF00849.17	PseudoU_synth_2	204	271	8.80E-09
Glyur000214s00016038.1	PF00849.17	PseudoU_synth_2	305	406	1.10E-06
Glyur000214s00016038.2	PF00849.17	PseudoU_synth_2	270	371	9.80E-07
Glyur000214s00016038.3	PF00849.17	PseudoU_synth_2	158	310	1.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.268
SRR1783600	control	6.338
SRR1783602	moderate drought stress	6.205
SRR1811619	moderate drought stress	6.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.681
DRR006520	Root Summer glycyrrhizin high producing strain	4.645
DRR006521	Root Winter glycyrrhizin high producing strain	4.146
DRR006522	Root Winter glycyrrhizin high producing strain	4.243
DRR006523	Root Summer glycyrrhizin low producing strain	3.301
DRR006524	Root Summer glycyrrhizin low producing strain	3.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.870
SRR2868004	Drought Stress (root)	7.246
SRR2967015	Control (root)	7.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.704
SRR9715740	Leaf	14.512
SRR9715741	Leaf	9.814
SRR9715739	Root	1.789
SRR9715742	Root	3.018
SRR9715743	Root	2.817

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.591
SRR8749028	MeJA induced 9h	10.593
SRR8749029	MeJA induced 9h	5.126
SRR8749030	Uninduced	3.798
SRR8749031	Uninduced	0.881
SRR8749032	Uninduced	1.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.149
SRR8400027	Control - Root	8.366