Gene detail information of Glyur000214s00016033 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06050.1 | 3.00E-73 | peroxiredoxin IIF |
| NR | AFK38777.1 | 8.90E-131 | unknown [Lotus japonicus] |
| COG | YP_003269507.1 | 1.00E-38 | redoxin [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9M7T0|PRX2F_ARATH | 1.00E-101 | Peroxiredoxin-2F, mitochondrial (Precursor) |
| trEMBL | tr|I3SET5|I3SET5_LOTJA | 3.00E-131 | Uncharacterized protein {ECO:0000313|EMBL:AFK38777.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00214 | 189805 | 192052 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000214s00016033.1 | PF08534.5 | Redoxin | 39 | 195 | 6.50E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 408.949 |
| SRR1783600 | control | 409.942 |
| SRR1783602 | moderate drought stress | 454.793 |
| SRR1811619 | moderate drought stress | 451.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 191.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 189.402 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 232.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 225.594 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 202.218 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 202.246 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 185.960 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 184.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 133.913 |
| SRR2868004 | Drought Stress (root) | 113.056 |
| SRR2967015 | Control (root) | 101.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 108.422 |
| SRR9715740 | Leaf | 100.607 |
| SRR9715741 | Leaf | 103.123 |
| SRR9715739 | Root | 158.807 |
| SRR9715742 | Root | 128.575 |
| SRR9715743 | Root | 131.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.071 |
| SRR8749028 | MeJA induced 9h | 55.267 |
| SRR8749029 | MeJA induced 9h | 78.903 |
| SRR8749030 | Uninduced | 38.769 |
| SRR8749031 | Uninduced | 29.794 |
| SRR8749032 | Uninduced | 45.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 119.344 |
| SRR8400027 | Control - Root | 128.837 |