Gene detail

Gene detail information of Glyur000214s00016031.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06060.1	7.00E-126	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003546136.1	0	PREDICTED: 3-ketodihydrosphingosine reductase-like [Glycine max]
COG	YP_001515088.1	8.00E-52	short chain dehydrogenase/reductase family oxidoreductase [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q0WRJ2\|TC10A_ARATH	5.00E-158	3-dehydrosphinganine reductase TSC10A
trEMBL	tr\|K7MAQ6\|K7MAQ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G11231.1}

Sequence

Transcript Sequence

>Glyur000214s00016031.1
CAAGCATAGCATAGGCTTTGGACCTTTGGTGAGAGTGAGGACAAAATCCGAAGCACACAATTAGCATAGCTGCAGCATTAGCGCATAGCATAGGATTGTTCTTCACACTAACACTTGAATTGTTGGAGAAGGTGGTTTTGGAACACGTGCATCAATCAATGGCGGACGCGTACTTCTCCTTCTTCGTTCTCCTTCCCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTCTACTTCCTGGTCCGGCCCCGCCCTGTCCAGATCCCGATCAAGAACCGCCACGTGTTCATCACCGGCGGATCCAGCGGCATCGGCCTCGCCCTCGCCCACCGCGCCGCCTCCGAGGGCGCCCGCGTCTCCATCCTCGCCCGCTCCCCCGAGAAGCTCGAGGAGGCCAAAACCGCCGTCCGCCTTGCCACCGGCATCGACGTGGCTGTGTTCGCCGCCGACGTGCGTGACTACGACGCGGTTAAGAGGGCGGTGGACAAGGCGGGCCCCATCGACGTGCTGCTCCTTAACCACGGCGTGTTCTACGCCCTGGAGCTGGAGAAGATGGAATTGAGTGAGGTGAAGTTCACCATGGACGTCAATCTCATGGGTTGCTTAAACATGATCAAGGCCGCGTTGCCCGCTATGAAGACCAGGAACGACCCTCTNCCCGCTTCCATTGCTTTTGTCTCCTCACAGGCTGGTCAGGTGGGAATTTATGGTTATGTAGCTTATTCAGCTAGTAAATTTGGCCTCCGTGGTTTAGCGGAAGCGTTGCAACAAGAGGTTATAGGAGATAATATTCACGTCTCTCTGATATTCCCACCGGACACGGATACTCCTGGACTTGTAGCAGAAAACAAGAGAAAACCTGAGCTCACCAAAATCATTGCATCCTCTTCTGGTTCTATGAAGCCTGAGGAAGTTGCTAAGAAGGCTTTTGATGGCATAAAATGTGGAAATTTTATCATTTCCTGCAATTTGGAGGGATTTGCATTAGCCCTAGCAACTACAGGATTATCCCCTCAGAGATCATTCTTAATGGCATTTGTTGAGGTTGTTGCTGCTGGAATACTACGCATTGCAGCACTATGTTTCCAGTGGAGTTGGTATGGAAGTATAGAGAAGTATCACAGCCAAAGGAAGGGTAAGTTCACCCCAAAGGAGCTGATGCAATCTGAGCTCTATGCTCTGTTTTAGGAGAGTAATATGCAAATAACGGGATGTGGTTTTGGTCTACTCTGTTCTATGATGAAATCAATATAGGGAAATTCAAATGATTGCTGACCAATGAGAACTCGATAAACACCAACTTTGTGGTTTCTGACCTGCTGCTTGGCTTGACAGAGAGAGTAGAAAATGAAAATATGGCACATCTCATTTTCCTCTCTCACAGTTTTGTTAAGTAAAGGAAATGATTAGCAATTTAACATCCTTTTAACTGTATGACAGTTTTGTATCGAGTTGGCCTCACGTACTTTCTGTTAGTAAAAGGGGTATGCTTCCTAGTTCTTTAAAGTGCATGGTATTTAGCTTTCACTTGTGGATTCATTAGTAGTTATTTGTTATAATCATGTCCTATGCGAAGCATGAATGAGGATCTCATCTTGTGTGTTAATGTTACTGCAACAGAGATTCGAATAGGATATAGTTGATTTCATCGTGTAACTATTTGACTATGTACCGTAACTTTAAGCACAATCTGTAATTTCATTGCACCAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	181360	184592	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04708	E1.1.1.102	EC:1.1.1.102	Sphingolipid metabolism	map00600

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016031.1	PF00106.20	adh_short	40	204	3.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.010
SRR1783600	control	14.061
SRR1783602	moderate drought stress	17.038
SRR1811619	moderate drought stress	16.719

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.910
DRR006520	Root Summer glycyrrhizin high producing strain	15.689
DRR006521	Root Winter glycyrrhizin high producing strain	24.575
DRR006522	Root Winter glycyrrhizin high producing strain	23.951
DRR006523	Root Summer glycyrrhizin low producing strain	17.747
DRR006524	Root Summer glycyrrhizin low producing strain	17.705
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.157
SRR2868004	Drought Stress (root)	14.780
SRR2967015	Control (root)	14.505

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.458
SRR9715740	Leaf	8.766
SRR9715741	Leaf	8.838
SRR9715739	Root	16.225
SRR9715742	Root	18.264
SRR9715743	Root	16.871

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.611
SRR8749028	MeJA induced 9h	13.548
SRR8749029	MeJA induced 9h	13.866
SRR8749030	Uninduced	5.615
SRR8749031	Uninduced	2.269
SRR8749032	Uninduced	5.334

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.255
SRR8400027	Control - Root	13.715