Gene detail

Gene detail information of Glyur000214s00016029

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06080.2	3.00E-148	Plant protein of unknown function (DUF828)
NR	XP_004486138.1	0	PREDICTED: uncharacterized protein LOC101494397 [Cicer arietinum]
Swissprot	tr\|Q9LDG2\|TBL10_ARATH	0	Protein trichome birefringence-like 10
trEMBL	tr\|I3S5T2\|I3S5T2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK35624.1}

Sequence

Transcript Sequence

>Glyur000214s00016029.1
CCCATATCTTTCTTTTCTCTTTTGGCTTTTCATTCACGATATTTACTAAACTGACCTATCAAGCAAAAGATTAGTGAACATGCTTCTATTGTATCGGGTGGCATGAAAAGTGCCATATATTGCTTGCATGCCACCCTTCTCCGTTTACCCACAAAGTTGTCAACTTCCTCTGTTTTTTCTCACCACTCTTCACAACCGCCACCGTTATAGGGATACCCACTTATTAGTTACCCAGATTCCGGAATTTTGAATTTTCCCTTTTTGGACTTAATTCAATGTCTTCTAAGAACTCTCCACAACGACACGTCGAAGCCATGTCCATGTCCATGCCAGTGTTTGAAGTTTTCAGAAGGGTCAAGCGTTTGAGGTTGTTCGAACCGTCTTTGGGTGTTGCTGGATTTTTTCTAGTCCCTGCCTTTGTTATTTGCTGCTTCTTCTACTTGGATTTCAGAGAACTCGGTGGAAGATTCGGGCCTTCGGGTCAACCCCAGAGGTTATTGACTTGGTCTCAAGGCTCAGAACATAATAGAGTTGAGTTTCTCGAAGAAAAGGGTGGTGGGTGTGATTTGTTTGAGGGAAACTGGGTTTGGGATGAAAGCTACCCATTGTACCAGTCAAAAAATTGCAACTTCCTNGATGGAGGATTTAGGTGTTCTGAGAATGGAAGACCCGATTTATTTTACACAAAGTGGAGATGGCAGCCCAAANATTGCAACTTGCCCAGATTCAATGCAACAATGATGTTGGAGAAACTGCGGAACAAGCGCCTAGTGTTTGCTGGGGACTCAATTGGGAGAAACCAATGGGAATCACTATTATGCATGCTCTCTTCTGAAGTTCCTAACAAGGAGTCATCAATCTATGAAGTAAATGGTAGCCCAATTACAAAGCACAAGGGGTTCTTGGTGTTCAGATTCAAGGATTTTAATTGTACAGTGGAATACTACAGAGCTCCATTTCTTGTATTGCAAAGCCGGCCTCCAACTGGATTAACAACCAAAAACATTAGGACAACCCTGAAATTGGATCAAATGGATTGGAACGCTTGGAAGTGGAGAGATGCAGATGTTTTGGTTCTTAACACAGGACACTGGTGGAATTATGAGAAAACCATAAGAGGGGGTTGTTATTTCCAAGAAGGTATGGAAGTCAAGTTGGAAATGAAGGTAGAAGAAGCATTTAAGAGGTCTATTGAGACAGTATTGAACTGGATACAGGATACAATAAATCCTAGGAAGACTCAAGTTTTCTTTCGTACCTATGCCCCTGTACATTTCAGGGTATTGAATGTGACACGGATGACGGCTCAGAGAAAAGACGGGCATTCATCTATCTATTATATGGGTCCCAATGCAAACCCTGCACCTCCACATCGCCAAGATTGCAGCCACTGGTGTCTTCCTGGTGTACCTGATACATGGAATGAGTTGCTTTATGCATTGTTCCTCAAGTATGAAACTCCTCNTGGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	176141	180000	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016029.1	PF14416.1	PMR5N	95	147	4.50E-23
Glyur000214s00016029.1	PF13839.1	PC-Esterase	148	337	4.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.501
SRR1783600	control	0.612
SRR1783602	moderate drought stress	0.917
SRR1811619	moderate drought stress	0.861

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.110
DRR006520	Root Summer glycyrrhizin high producing strain	0.218
DRR006521	Root Winter glycyrrhizin high producing strain	0.444
DRR006522	Root Winter glycyrrhizin high producing strain	0.525
DRR006523	Root Summer glycyrrhizin low producing strain	0.272
DRR006524	Root Summer glycyrrhizin low producing strain	0.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.134
SRR2868004	Drought Stress (root)	5.239
SRR2967015	Control (root)	5.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.205
SRR9715740	Leaf	6.453
SRR9715741	Leaf	6.850
SRR9715739	Root	0.207
SRR9715742	Root	0.588
SRR9715743	Root	0.321

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.658
SRR8749029	MeJA induced 9h	0.159
SRR8749030	Uninduced	0.385
SRR8749031	Uninduced	0.208
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.431
SRR8400027	Control - Root	1.728