Gene detail

Gene detail information of Glyur000214s00016025

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19140.1	9.00E-109	Aluminium induced protein with YGL and LRDR motifs
NR	AFK47682.1	9.04E-161	unknown [Medicago truncatula]
COG	YP_007590033.1	8.00E-09	asparagine synthase, glutamine-hydrolyzing [Rhodanobacter denitrificans]
Swissprot	tr\|P24805\|TSJT1_TOBAC	7.00E-37	Stem-specific protein TSJT1
trEMBL	tr\|I3T590\|I3T590_MEDTR	3.00E-161	Uncharacterized protein {ECO:0000313\|EMBL:AFK47682.1}

Sequence

Transcript Sequence

>Glyur000214s00016025.1
AGATACCCTCGTCCTTTCCTTCTATATAGCGCACTCTTCGTGCTCATTTCCCATTCCATCCCCATCTGTGTGAACTTTCTCGCGTAACCCAGACAGAGAGAGAAGGGGCAACCTTTTTTTTTTCCTTTTTTTTTCGAAAGAGAGAGAGAGAGAATGCTGGGGATCTTCAGCAGCTCCGTCGTGTCCCCACCGGAAGAACTGGTGGCCGCCGGCAGCCGAACTCCGTCACCAAAGACGACGGCGGATTCGCTCCTGAAACGGTTCGTCGAGAGCAAGGCGTCGGCGGTGTCCCTGCAGGTTGGGGATCACGTGCAGTTGGCTTACACTCACCACGACGAGTCACCGTGGCAACCCAGATCATTTGCTGCTAAGGATGAGATATTCTGCTTGTTTGAGGGAGCACTTGACAATTTGGGCAGCTTGAGACAGCAATATGGACTCGCCAAGTCTGCCAATGAAGCAGTTATGGTGATNGAGGCTTACAAAGCTTTACGTGATCGAGCACCTTACCCTGCCAATCATGTTGTTGGCCATCTCAGTGGGAGCTTTGCTTTCATTGTTTTTGACAAGTCCACTTCTACCCTCTTTGTGGCTTCTGACCAATCCGGAAAGGTTCCTCTTTATTGGGGAATAACTGCTGATGGGTACGTAGCATTTGCTGATGATGCTGATTTGCTTAAAGGTGCTTGTGGAAAATCACTTGCTTCTTTCCCTCAAGGATGTTTCTACTCCACAGAAGTTGGAGGACTGAGATGCTATGAGAATCCAAAGAATAAGATTACTGCAGTACCTGCTGAGGAGGAGGAAATCTGGGGTGCAACCTTCAAGGTGGAAGGGCCAGCAGTCCTTGCAGCCAAGTAGATCCTTTTTCAAATGGAGCAATGTGTTTATGTGGTTGTGACTTGNGACTGCAAGACATTCACGAGGGGCCATGTAAATAACTTCACTGGTAAATGAGAAGAATTATGGGACAAGTAGTACAGTTTATTCTGGTGTAGTAGTTTTGTTCATTAGATAGTATTTACTGTGTTTCTAATGTCCAGTGGTGCTTGTTAGATAAGATTTACTAAGTTTCTAATGCCCAGTTGCGCTTCCCAATGTAATAAAAATATGCGTCTGGCTTGAGATTCTCTAGTACTCTCATTCTGTGTAAAGCGTGTACATATAAATATCGTTCACTTCAACTAATTATTAAGGATCTTGTTCCTGAAGTGAGCAATTTAATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	155490	162031	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016025.1	PF12481.3	DUF3700	2	226	2.50E-95

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	181.721
SRR1783600	control	182.648
SRR1783602	moderate drought stress	685.822
SRR1811619	moderate drought stress	681.860

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	444.628
DRR006520	Root Summer glycyrrhizin high producing strain	438.297
DRR006521	Root Winter glycyrrhizin high producing strain	1198.958
DRR006522	Root Winter glycyrrhizin high producing strain	1166.823
DRR006523	Root Summer glycyrrhizin low producing strain	504.351
DRR006524	Root Summer glycyrrhizin low producing strain	502.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	163.934
DRR006526	Leaf Summer glycyrrhizin high producing strain	162.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	188.259
SRR2868004	Drought Stress (root)	236.775
SRR2967015	Control (root)	308.580

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	534.975
SRR9715740	Leaf	740.434
SRR9715741	Leaf	767.996
SRR9715739	Root	1004.563
SRR9715742	Root	527.028
SRR9715743	Root	605.776

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.726
SRR8749028	MeJA induced 9h	51.460
SRR8749029	MeJA induced 9h	55.640
SRR8749030	Uninduced	13.289
SRR8749031	Uninduced	7.740
SRR8749032	Uninduced	34.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	453.489
SRR8400027	Control - Root	415.903