Gene detail

Gene detail information of Glyur000214s00016020

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	4.00E-47	Eukaryotic aspartyl protease family protein
NR	KEH36787.1	2.43E-164	extracellular dermal glycoprotein [Medicago truncatula]
Swissprot	tr\|P13917\|7SB1_SOYBN	5.00E-35	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|A0A072V4P8\|A0A072V4P8_MEDTR	9.00E-165	Extracellular dermal glycoprotein {ECO:0000313\|EMBL:KEH36787.1}

Sequence

Transcript Sequence

>Glyur000214s00016020.1
ATGGACTATTCATGGATCCAATTCAATGGTGATGGCAAAGAGAAATGGACAGAGCCAAGGGCGTCGTTTGTTGAGGCTTCGATTGTTCTTGGTGGACATCAGTTGGTGGATAATCTTTTGGTGTTTGATTTGGCTTCTTCCAAATTAGGCTTTAGTTGCACAAACAACACTTGCCCCGCTAATGCACTCAACACATTCGCCAAATTCATCTTTGGTGGTGACCTTGGTGAGGATCTCATCTTCATTTCACAACAGAAAGTCCCTGGCTTGCTCACTAGCTGCCTTGACACTGATAGGCTCCCATCATTCACCGGTGAGGACTCACCACTAAATGGGTTACCCAAAAGCACCAAAGGGATTATTGGCCTANCAAGGTCACAACTTTCACTACCAAATCAGCTTGCTTTGGCAAATAAGCTTCCACCGAAGTTTTCTCTCTGTTTGCCCTCTTCAAACAAGCAAGGATTCACCAATTTGCTTCTTGGGGAAGGGGGAGATCCTCATCAGGGACTTTACAAATTTGTTCAAACCACACCATTGATTGTTAACCCAGTTGCCACAGAACCAGTTTCTGTGCAGGGTGTTGCTTCCAAGGCATATTTCATTGATTTGAAATCGGTTAAGATCGATGGCAATGTTTTGAACTTGAAGCCTTCACTGTTGTCAATTGACAATAAGGGAAATGGGGGTACCAAGATCAGCACCATCAGTAATTTCACTCAGTTACAAAGCTCTGTATACAAGCCTTTTATTAGGGAATTCCTCAAGAAGGCTTCGGACAGAAGACTTAAAAGAGTGGCATCAGTGCCACCATTTGAGGCATGTTTTGATTCAAGCACCACTGGAAGTGTGCCCAAAATTGANCTTGTGCTACAAGGGGGAGTGCAATGGACTATTCANGGATCCAATTCAATGGTGATGGCAAAGANAAATGTGGCGTGCCTTGCATTTGTTGATGGAGGGACAGAGCCAAGGATGTCGTTTGCTAAGGCTTCAATTGTTATTGGTGGACATCAACTGATGGACAATCTTTTGGTGTTTGATCTTGCTTCCTCCAAATTGAGCTTCAGTTCCTCGCTTTTGCTCCACAATGCGAGCTGGAAACGCTACCCTCTCAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	119898	138350	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016020.1	PF14543.1	TAXi_N	52	162	4.00E-18
Glyur000214s00016020.1	PF14541.1	TAXi_C	199	358	3.00E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.005
SRR1783600	control	0.071
SRR1783602	moderate drought stress	0.068
SRR1811619	moderate drought stress	0.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.019
DRR006521	Root Winter glycyrrhizin high producing strain	0.020
DRR006522	Root Winter glycyrrhizin high producing strain	0.097
DRR006523	Root Summer glycyrrhizin low producing strain	0.250
DRR006524	Root Summer glycyrrhizin low producing strain	0.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.102

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.302
SRR2868004	Drought Stress (root)	2.778
SRR2967015	Control (root)	1.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.073
SRR9715740	Leaf	0.102
SRR9715741	Leaf	0.743
SRR9715739	Root	0.139
SRR9715742	Root	0.634
SRR9715743	Root	0.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.612
SRR8749028	MeJA induced 9h	7.375
SRR8749029	MeJA induced 9h	13.044
SRR8749030	Uninduced	94.596
SRR8749031	Uninduced	104.544
SRR8749032	Uninduced	91.259

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.624
SRR8400027	Control - Root	0.743