Gene detail

Gene detail information of Glyur000214s00016019

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	8.00E-59	Eukaryotic aspartyl protease family protein
NR	XP_004486143.1	0	PREDICTED: basic 7S globulin-like [Cicer arietinum]
Swissprot	tr\|P13917\|7SB1_SOYBN	5.00E-44	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|V7BP67\|V7BP67_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19757.1}

Sequence

Transcript Sequence

>Glyur000214s00016019.1
ATGTCTTCTCCTTCTTCCACCCATCTCTTCCTCCTCTCTCTAGCCCTTTTCTCATCTTGCTGCTTTTCAGCATCACACCCTTTTATCCTTCCCATCAAGAAAGACCAAGCAACAAACCTCTTCTATACCTCAGTTGGCATAGGAACCCCTCGACACAACTTCAACCTTGCCATTGATCTTGGAGGAGACAACCTCTGGTACGACTGTGACACCAACTACAACTCATCATCCTACAGTCCCATAGAGTGTGGCTCAAAGAGATGCCCTGAAATTGGATGCATTGGCTGCAATGGCCCTTCAAACCGGGTTGCACAAACAACACTTGCCCCGCTAATGCACTCAACACATTGGCCAAATTCATCTATGGTGGTGGCCTTGAAGGTGTCTGGCTTGCTCACTAGCTGTATTGACACTGATGGGTTCCCATCATTCACTGGTGAGGATTCGCCACTAAATGGGTTACCCAAAATCACCAAAGGGATTATTGGCCTAGCAAGGTCACAACTTTCACTACCAAATCAGCTTGCTTTGGCAAATAAGCTTCCACCCAAGTTTTCTCTCTGTTTGCCATCTTCAAATAAGCAAGGATTCACCAATTTGCTTGTTGGGGCTGGGGGAGATCCTCACCAGGAACTTTACAAATTTGTCCAAACCACACCATTGATTGTTAACCCAGTTGCCACAGAACCAGTTTCTGTGCAGGGTGTTGCTTCCAAGGAATATTTCATTGATGTGAAATCGGTTAAGATCGATGGCAATGTTTTGAACTTGAAGCCTTCCTTGTTGTCAATTGACAATAAGGGAAATGGGGGTACCAAGATCAGCACCATCAGTAATTTCACTCAGTTACAAAGCTCTGTATACAAGCCTTTTATTAGGGAATTCCTCAAGAAGGCTTCGGATAGAAGACTTAAGAGAGTGGCATCAGTGCCACCATTTGAGGCATGTTATGACTCAAGCACCATTGGAAGTGTGCCCAAAATTGAGCTTGTGCTACAAGGGGGAGTGCAATGGACTATTCATGGATCCAATTCAATGGTGATGGCAAAGAAAAATGTGGCGTGCCTTGCATTTGTTGATGGAGGGACAGAGCCGAGGATGTCGTTTGCTAAGACTTCAATTGTTATTGGTGGACATCAACTGGTGGACAATCTTTTGGTGTTTGATCTTGCTTCCTCCAAATTGAGCTTCAGTTCCTCGCTTTTGCTCCACAATGCGAGCTGTTCCTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	118577	119838	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016019.1	PF14543.1	TAXi_N	41	200	1.10E-27
Glyur000214s00016019.1	PF14541.1	TAXi_C	240	399	4.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.213
SRR1783600	control	0.223
SRR1783602	moderate drought stress	0.238
SRR1811619	moderate drought stress	0.234

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.156
DRR006520	Root Summer glycyrrhizin high producing strain	0.197
DRR006521	Root Winter glycyrrhizin high producing strain	0.482
DRR006522	Root Winter glycyrrhizin high producing strain	0.408
DRR006523	Root Summer glycyrrhizin low producing strain	2.157
DRR006524	Root Summer glycyrrhizin low producing strain	1.630
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.337
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.242

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.690
SRR2868004	Drought Stress (root)	38.135
SRR2967015	Control (root)	23.354

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.126
SRR9715740	Leaf	1.551
SRR9715741	Leaf	17.707
SRR9715739	Root	3.377
SRR9715742	Root	6.661
SRR9715743	Root	7.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	246.943
SRR8749028	MeJA induced 9h	340.445
SRR8749029	MeJA induced 9h	250.261
SRR8749030	Uninduced	1692.443
SRR8749031	Uninduced	2094.280
SRR8749032	Uninduced	1195.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.686
SRR8400027	Control - Root	11.124