Gene detail

Gene detail information of Glyur000214s00016017

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	5.00E-74	Eukaryotic aspartyl protease family protein
NR	KEH36785.1	0	eukaryotic aspartyl protease family protein [Medicago truncatula]
Swissprot	tr\|P13917\|7SB1_SOYBN	1.00E-45	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|A0A072VF53\|A0A072VF53_MEDTR	0	Eukaryotic aspartyl protease family protein {ECO:0000313\|EMBL:KEH36785.1}

Sequence

Transcript Sequence

>Glyur000214s00016017.1
ATGGCTTCATTTTCTCTCTTCCTTTCCCTCTGTTTCTCACTCCTCTCCCTTGTTTTCACCCATAGCTCCTCTTCCCTAGTCCTCCCCGTCACGAAGGACAACGCAACACTCCAATACTTGACCGCTCTCTCTTATGGCACCCCTTTTGTACCCACCAAGCTCGTGCTGGATCTCGGAGGTCCACTCCTCTGGGTCGATTGTGCTTCCTCCAGAAACACCCCTTCTTCTTCTTCTTCTTCTCTCCGCACCATTCCTCACCGCTCCGTTCAATGCCTCACCGCAAAAAGCCACGAAATTGAGACCCAAACATGGCTCTCAAGCCTCGAAAACCCTTTAGATCAAGACCACCCATGTCAAATTCTCACTGAGAACAGCATCACAGGGAAAGGGGCAACTGAAGGAGAGCTCGTAGAAGACCTAATAGCACTTTCTAAATCAAGCGTTGTGGAATTGGAACCCGAACCCACAAAACAACCGTTACTCTTCACTTGTTCACAAACCCCTCTCTTGAATGGTTTGGCAAGTGGTGCTAAAGGCATGGTGGGTCTTGGTAGATCTCGCACCTCTTTCTCATCACAGTTTTTCAATTCAATCAGTTCCCAGAGAAAAATCACTCTTTGCCTCTCTTCTTCTTCTGGGGTTGCTCAACTTGGAAGCACGGCCTATGGATCTCAACCCGAATCTGAGATTCTCAGATCTCTAACATTCACACCCCTTCTCACCAACCAAAACNAGAGATACCCATCTTCACAGGAATATTTCATCAACGTTAACTCCATCAAAATCAGCGGAAAAAGGGTGTCTTTTAATACCCCATCACTGTCCCAAGACCAAGAGGGACATGGGGGTACTCAGTTGAGCTCGGTTGTGCCTTACACCACCATGCAGAGTTCGATCTATGCTAATTTCGAGAGTGCTTTTCTGAAAGCTGCTTTGTCTATGAACATGACTAGAGTAGATCAAGTGGCTCCCTTTGGGCTTTGTTTTGGATCCCAAGTTGGGCCTAACGTGCCGGTTATTGAGTTGGTTCTGCAGAGTGAGATGGTGAAGTGGAGCATATATGGAAGGAACTCCATGGTGAGGGTGAGCGATGATGTTATGTGCTTGGGATTCTTGGATGGGGGTGTGGACCAGAGAAATCCCATTGTGATTGGAGGGTATCAATTGGAGGATGTTTTGGTTCAGTTTGATCTTGACACTTCCATGGTGGGATTTAGTTCCTCCCTTTTGATGAGGCAAACTAGTTGTTCTAATTTCAGATTTGGTTCCATGCCTGCAAGATCTGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	111572	112861	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016017.1	PF14543.1	TAXi_N	39	218	4.40E-31
Glyur000214s00016017.1	PF14541.1	TAXi_C	252	407	1.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.834
SRR1783600	control	26.857
SRR1783602	moderate drought stress	90.049
SRR1811619	moderate drought stress	82.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.729
DRR006520	Root Summer glycyrrhizin high producing strain	51.941
DRR006521	Root Winter glycyrrhizin high producing strain	30.076
DRR006522	Root Winter glycyrrhizin high producing strain	29.622
DRR006523	Root Summer glycyrrhizin low producing strain	12.470
DRR006524	Root Summer glycyrrhizin low producing strain	12.352
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.560
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.982

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.043
SRR2868004	Drought Stress (root)	58.338
SRR2967015	Control (root)	81.372

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	185.982
SRR9715740	Leaf	170.741
SRR9715741	Leaf	194.284
SRR9715739	Root	23.966
SRR9715742	Root	30.984
SRR9715743	Root	26.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.682
SRR8749028	MeJA induced 9h	82.150
SRR8749029	MeJA induced 9h	39.691
SRR8749030	Uninduced	26.171
SRR8749031	Uninduced	40.491
SRR8749032	Uninduced	27.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.818
SRR8400027	Control - Root	7.081