Gene detail

Gene detail information of Glyur000214s00016009

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	4.00E-69	Eukaryotic aspartyl protease family protein
NR	KEH36774.1	0	eukaryotic aspartyl protease family protein [Medicago truncatula]
Swissprot	tr\|P13917\|7SB1_SOYBN	2.00E-56	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|A0A072V423\|A0A072V423_MEDTR	0	Eukaryotic aspartyl protease family protein {ECO:0000313\|EMBL:KEH36774.1}

Sequence

Transcript Sequence

>Glyur000214s00016009.1
ATGGCTTCATTTGCTACTCATATCTCCCTCCTCACAATAGCCCTTNTCTCATTTTCCTGCTTCTCACAATCACACAACAAACCAAGCACCCGTCCCTTTATCCTACCCATTGGAAAAGACCCAANAACCAATCTGTTCCACACTTCAGTTGGTGTAGGAACTCCTCGACACAACTTCGATCTAGTCATTGACCTCGGAGGACCAATCCTATGGTACGATTGNAACGATCGCTACAACTCTTCAACCTACCACCCTGTCCATTGTGACTCCAAACGTTGCCCTGCAAATTCCGCATGCACTGGATGCAGTGGCCCCTTTAAACCNGGTTGCACAAACGACACATGTGGTGCCAACATACTCAACCCATTTGCTGATGCTATATTTTCAGGGGACACAGGGGAGGATGTGTTGTTCTTCTCTCGTTCCGTATTGAATGGCCTAATTTCTGGATGCACCAACTCTGATGGATTTTCTGGCGACCCTTCACTCCTAAAAGGCTTACCAAAAGCTAGTAAAGGAATAATAGGCCTCGCAAGGACACAACTTGCGTTACCAACACAACTCTCATCATCTCACAACCTTCCTCGCAAGTTCTCTCTCTGTTTTCCATCTTCAAACAAGAGAGGACTTGGAAACCTCTTCATTGGTGGGTCACCCAATGCTGCTTCCAAGTTTCTTCTCACTACCCCTTTGATTGTTAACCCCTTTAGCACAGCTCCAATCTTTACNCAAGGGGATGCTTCTTATGAGTATTTCATTGATGTGAAGTCGATTAAAGTTGGTGGTCAAGTTCTCAACTTTAAGTCTTCCCTTTTGTCCATTGACAATAAGGGGAACGGTGGGACAAAGATTAGCACCATGAACCCCTTCACCGTGTTGCACAGTTCCATATACAATCCCCTTGTTAGAGATTTTGTCAAAAAGGCTGCGGATAAGAAAATCAAGAAAGTGGCTTCCGTGGTACCATTCGAAGCGTGTTTTGATCTCAGCACCATTGGTAGGAATGTTACTGGGGTGGATGTGCCCACTATTGATTTGGTGCTGCAGGGGGGTGTGCAGTGGACCATTTTTGGTGCCAATTCAATGGTGTCTGTGAAGAAAAACGTGTCATGCCTTGGATTTGTGGATGGTGGTAGAAAGCCAAGAACATCGGTTGTTATTGGTGGGCATCAATTGGAGGACAACCTTTTGGAGTTTGATTTGGTTTCCTCCAAACTGGGTTTCAGCTCTTCCCTCCTCCTCCATAAAGCAAGATGTTCCCACTTCACTAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	100296	101570	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016009.1	PF14543.1	TAXi_N	47	217	2.50E-34
Glyur000214s00016009.1	PF14541.1	TAXi_C	250	410	5.30E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.029
SRR1783600	control	0.029
SRR1783602	moderate drought stress	0.298
SRR1811619	moderate drought stress	0.274

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.087
DRR006524	Root Summer glycyrrhizin low producing strain	0.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.531
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.105
SRR2868004	Drought Stress (root)	15.170
SRR2967015	Control (root)	22.130

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.175
SRR9715740	Leaf	0.134
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.048
SRR9715743	Root	0.047

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	157.070
SRR8749028	MeJA induced 9h	3.673
SRR8749029	MeJA induced 9h	19.918
SRR8749030	Uninduced	0.949
SRR8749031	Uninduced	1.357
SRR8749032	Uninduced	11.313

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.439
SRR8400027	Control - Root	0.965