Gene detail

Gene detail information of Glyur000214s00016007

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06130.1	2.00E-39	Heavy metal transport/detoxification superfamily protein
NR	XP_008223004.1	1.94E-99	PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	5.00E-12	Copper transport protein ATX1
trEMBL	tr\|A0A072V529\|A0A072V529_MEDTR	4.00E-95	Heavy metal transport/detoxification domain protein {ECO:0000313\|EMBL:KEH36771.1}

Sequence

Transcript Sequence

>Glyur000214s00016007.1
GTCTCCGAAGAGATGAGCCATGGCTGCAAAAATACCCCATAAATAATGGCAGAAAAGAAAGAGTGAACGCTTGGATTGGAACACCATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTGCTACCTTCCCTTTTTCATTTTGCTCATGCCTCACTCTCCTCTCTCTTTCACCCTGAAATACAGGATTCAGAGGTCTTTAATGACTACCCACCATAGTTGAGCCCCTCTCTCTCTCTCCCTCTCTCCCTCTCTTTTCCTCTCTCCAAGTCTGAGCCTTTGCTGTTCAGACTCGCTTTCTCTGCTCACTCAGAGACTGAGACACTCTTTTTTCTTTTCTGTCATTGGCTCTGTGTTTTGCTTCCGAAAGCTCCAGACCATAAACCAAAGATTGGAAACAANTTCTCTAGCTCATTCTCTGAATTTTTTTTCTTCTTCTTGCCATCTCAGTTTCTCAGATCTGTTTCCTTTTTGCATTTTCCGTCTTTTTTACAATTTTTTGTTCCGTTGCCGGGGTAAGAGTTAAAGACATGAGTAAAGAGGAGTTTTTGAAGATACAGAAATGTGTTCTTAAAGTGAACATCCACTGTGACGGTTGCAAGCAGAAAGTGAAGAAAATCTTGCAGAAGATTGATGGGGTTTTTACCACNGAGATAGATGCTGAACAAGGGAAGGTGACCGTTTCGGGGAATGTGGACCCCAACGTTCTCATCAAGAAGCTTGCAAAATCAGGGAAACATGCAGAGCTCTGGGGTGCTCCCAAGGGAAACAACAACAACAACAATCAGAACCAGAACAACATTGCCAACCAGTTGAAGAACATGCAAATTGACCATGGCAACAAAGGCGGGGGAAACAACAACAAGGGTCAGAATCAGAATCAGAATCAAAAGGGTGGAAATAATAACCAACCCAAGGGTGGCCAGCAGCAAGGACAGAATCCCCAGCAGCAACAACAGCTGCAACAACAACAGCAACAACACCAGCAACTTCAGCAACAGCTACAACAGCTGCAACAACTTCAGCAGATGAAAGGGTTCCAAGATCTGAAGCTGCCTCAATTCAAGGACATGAGGCTGCCCAACAACAACCAGAATCCCAACCCCAACAACATGAAATCAGTGAAGTTCAGTTTGCCTGAGGAGGATGACCTTTCTGATGACGAGTTAGACGANTTTGATGACGAGGATTCTGATGAGTTTGATGATGAAATGGACGATCCACAACACCCTCTGAATAAGATGAAGCTCCCTATGGGTAATGGCCCTCACATGATGATGATGAATGGGAATCATCACCCACAACTCATGAATGCTCAAAAGGGTGGGAATGGTGGTGGTGGCAACGGTGGTGGAGGAGGGAATGGGAAGAAAGGTGGTGGTGGTGGTGGTGGACCTGTGCCTGTTCAAGTGCATAATGGAAATGGAGGAAAGAAAGGAGGAGGTGGTGGTGGTGGAAATAATCAGAATCAGGGTGGAGGTAACAAAAACAATGGTGGCAAAAATGGAGGTGGAATGCCAGAGGGTAAAAATGGAAACATTGGTGGGGGAAACAAGAATGGTGGTGGTGGTGGTGGTGGTGGTGGGCCAGGTGGCATTCCAAATAACAATGGGGGTAAAAAGGGAAATGGAATGGGTGAAGGGGGAGTTCAAGTTCAAGCTATGAACAATGGATTCCCAAACATGGGTGGTGGTCATGGTCATGGTCATGGTCATCATCCTAGTATGGCTAATGTGGGTCCCATGGGTAACATGAGCATCCCTATGGGAGGACCCATGGGAAACATGCCCATGAACATAAACCAAATGAGTAACATCCCCGCTGTTCAAGGCCTCCCTGCAGCCGCCGTAAACGGCGGAGGTGGTGCCGGTGGTGCCGCCGGGTACTTCCCGGGAGGAGCTGGTCCAGAAATGATGCCTGGAAACCCTTACCAACAGCAGCAGCAGCAACAACAACAACAGTACATGGCTGCAATGATGAACCAACAAAGGGCAATGCCAATGGGAAATGATAGATTCCAGCCAATGATGTATGCAAGGCCTCCAATGGCTGTTAATTACATGTACCCTCCTCCTTATAGCTACCCTCCTCCTNCTCCTACAGATCCATACTCCAATTTTTTCAATGATGAGAATACTTCAAGCTGCAGTGTTATGTGAAGAAAGAAAATGGATGGTGATGGTGGGTGGTGGTTCGGTTGTGGTTTCAAGGGCAGTAGGCCTTTCTAATCTGATGATGGATGGATGCAATATTATACAATGGATCAAATGAGTTTTTAATTTTAGTTTGGTTTTTCGATTTTCTTTTTATCCCATTTCATCCAAGTTTTTTAAAAAAAAGACCAGAGCTTTAAATTACCATAGGGGAGTAATTTATAGATTTTATAATGTTTTTATGAGATCTTTGGGAAATATCATGAGATGTAACGGGGATGGTGGTGGTGGGCTTCCTCCATGTGAGATGTCTATATATGTGTTTATATGCTGCAAACAGAAATAAAATTTCAGAGAAGGAAAGGGCAAAAAAAAAGGAGAAAATGGGGTGAACAGAGAAAAGCCTATCTCACTCATTTCTCTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	71875	74893	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016007.1	PF00403.21	HMA	14	70	1.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.095
SRR1783600	control	50.437
SRR1783602	moderate drought stress	42.151
SRR1811619	moderate drought stress	41.920

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.289
DRR006520	Root Summer glycyrrhizin high producing strain	45.856
DRR006521	Root Winter glycyrrhizin high producing strain	1.205
DRR006522	Root Winter glycyrrhizin high producing strain	1.143
DRR006523	Root Summer glycyrrhizin low producing strain	23.189
DRR006524	Root Summer glycyrrhizin low producing strain	23.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.769
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.721

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.428
SRR2868004	Drought Stress (root)	24.846
SRR2967015	Control (root)	29.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.993
SRR9715740	Leaf	0.715
SRR9715741	Leaf	1.716
SRR9715739	Root	11.833
SRR9715742	Root	51.965
SRR9715743	Root	42.754

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	162.703
SRR8749028	MeJA induced 9h	81.089
SRR8749029	MeJA induced 9h	59.491
SRR8749030	Uninduced	11.590
SRR8749031	Uninduced	1.275
SRR8749032	Uninduced	3.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.916
SRR8400027	Control - Root	62.042