Gene detail

Gene detail information of Glyur000214s00016004

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06140.1	1.00E-89	RING/U-box superfamily protein
NR	XP_003542886.2	5.48E-171	PREDICTED: probable E3 ubiquitin-protein ligase LUL4-like [Glycine max]
Swissprot	tr\|Q8LA32\|LUL4_ARATH	6.00E-110	Probable E3 ubiquitin-protein ligase LUL4
trEMBL	tr\|I1M144\|I1M144_SOYBN	4.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G27930.1}

Sequence

Transcript Sequence

>Glyur000214s00016004.1
CATTCTAGAGACCCCAGAGAGCNGTGGAGGAGGGGTAGCCTGCAGGNTAAGGAAACTAATAAAGGTAAACGATACGAAGCGCGTTTGATAATAACAGTTGAAAGGAAGAAGATAAAGGTGGGGGATACCTCACCGCAATTTCTCATCCAGCACGCATCTCTTCTCTGTTTCTTTCTTCTTCAACACAAGGAGCTCAACAATACGCACCACACCACATCACACATATGGGTATTTCGTGGAGTGGCAGAAGAAGAAACAACTACTATCAGCATCACCCACCCCCACGGCCACCTCCACCACCCCCTTACTATTACTCTGCAGAGTCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCAAACAACCCCTTACACCCCACACTGCACCGGCTTTGTCACTCGCCCACCTCAGCCCCATTCCGCCCACTATGTCAATCCTCTTGTGGGTCGCTTTAACTACCAACCTTTCTATGTGAATCAACCTTTCTATGGGTGGGCCCCACCTCGCCTTTCTGCTGCCCCTGCTTCTGCTTCCTCCACNACCCCACCTCCCTATGTTGACCATCAAACTGCCAAGAAGATCAGGAACCATGTCAATGTTCACAAAGACACGCTGCGCCTCGAGCTTGATGACCACAACCCTGACTNCCACCTCGTTTCTTTCGTTTTCGATGCTTTCTATGATGGAAGCATTACTATCTTGTACTTTGCGAAGGAAGAAGAGAATTGTAGGTTTGTTCCGCTATATCCTGAAGCATTTAAGCCGGNCAGAATTCCCTTTCAGAAAGGAGCTGGCCAGAAATTTGTTCAACCTTCAGGAACAGGGATTGACCTAGGCTTCTTCNCATTGGATGATCTTTCAAAGCCCTCACCCGGAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACATGTTTGGAAACTCCCTCAGTTGACAAAACTCCCGATGACTCCATGCTAGATGCATCCCCTAACATGCAAGTAACTCAAGCTGTCATAGAGAAAAGTAATGATGGTGGTCCTTTCCANATAAAAGTAGTTAGGCAGCTTCTGTGGATTGATGGTGTTCGTTATGAATTGAGAGAGATATATGGGATAGGAAGCTCAGCAGCAGNAGGTTTTGATGACTGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACACATGTGCATGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAGTGCCCTATATGCCGTCAGTCCATTGAGGAACTTATGGAGATCAAGGTGAACAATGGTGGTGATCGATGANACTTTTCTCCTCCTGATGCTAAGAGGTGAATTGCATGACATTCCCTATAAATTCCTCACTTGTTCGGAAGAAAAATTTCCCCCCTTTTTNACATGTCTGCAGTAAGGGGTAACATCGTACATGACGATTTCCTTTTTCTTTTTCTTTTTGTAAATTGTAGTGAATAATAATCTGTCCATAGTTCTCGTGTGTATGTATTGNAGGGAAAATTAGATCGTATACGCTTTTCCGGTGACTGAATGTTACTCCCGTGTCATCTATATTATACCCGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	57325	61957	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016004.1	PF13920.1	zf-C3HC4_3	305	351	2.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.711
SRR1783600	control	15.487
SRR1783602	moderate drought stress	20.877
SRR1811619	moderate drought stress	20.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.875
DRR006520	Root Summer glycyrrhizin high producing strain	20.088
DRR006521	Root Winter glycyrrhizin high producing strain	32.876
DRR006522	Root Winter glycyrrhizin high producing strain	31.569
DRR006523	Root Summer glycyrrhizin low producing strain	23.058
DRR006524	Root Summer glycyrrhizin low producing strain	22.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.853
SRR2868004	Drought Stress (root)	39.994
SRR2967015	Control (root)	32.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.452
SRR9715740	Leaf	31.288
SRR9715741	Leaf	45.029
SRR9715739	Root	26.076
SRR9715742	Root	29.240
SRR9715743	Root	28.731

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.677
SRR8749028	MeJA induced 9h	136.978
SRR8749029	MeJA induced 9h	162.952
SRR8749030	Uninduced	64.653
SRR8749031	Uninduced	108.485
SRR8749032	Uninduced	125.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.935
SRR8400027	Control - Root	15.846