Gene detail information of Glyur000213s00016107


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42650.10allene oxide synthase
NRXP_004499109.10PREDICTED: allene oxide synthase, chloroplastic-like [Cicer arietinum]
COGYP_002501570.11.00E-22heme peroxidase [Methylobacterium nodulans ORS 2060]
Swissprottr|P48417|CP74_LINUS0Allene oxide synthase, chloroplastic (Precursor)
trEMBLtr|Q7X9B4|Q7X9B4_MEDTR0Cytochrome P450 family fatty acid hydroperoxide lyase {ECO:0000313|EMBL:KEH40077.1} (Precursor)

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00213219202220809+


Gene family

Gene familysubfamily
Cytochrome P450 FamilyCYP74A


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01723AOSEC:4.2.1.92alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004497  monooxygenase activity

GO:0005506  iron ion binding

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037  heme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000213s00016107.1PF00067.17p4503645101.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control59.273
SRR1783600control58.030
SRR1783602moderate drought stress68.742
SRR1811619moderate drought stress63.972

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain154.297
DRR006520Root Summer glycyrrhizin high producing strain154.497
DRR006521Root Winter glycyrrhizin high producing strain10.452
DRR006522Root Winter glycyrrhizin high producing strain10.787
DRR006523Root Summer glycyrrhizin low producing strain78.920
DRR006524Root Summer glycyrrhizin low producing strain79.562
DRR006525Leaf Summer glycyrrhizin high producing strain42.278
DRR006526Leaf Summer glycyrrhizin high producing strain39.692

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)99.942
SRR2868004Drought Stress (root)179.216
SRR2967015Control (root)298.987

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf274.240
SRR9715740Leaf174.374
SRR9715741Leaf297.289
SRR9715739Root493.868
SRR9715742Root718.474
SRR9715743Root653.172

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h113.571
SRR8749028MeJA induced 9h57.498
SRR8749029MeJA induced 9h54.677
SRR8749030Uninduced121.948
SRR8749031Uninduced23.372
SRR8749032Uninduced44.387

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root71.444
SRR8400027Control - Root123.342

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved