Gene detail information of Glyur000213s00016102 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42660.1 | 2.00E-149 | Protein of unknown function (DUF616) |
| NR | XP_003544435.1 | 0 | PREDICTED: uncharacterized protein LOC100812230 [Glycine max] |
| COG | YP_447535.1 | 7.00E-15 | glycosyltransferase [Methanosphaera stadtmanae DSM 3091] |
| trEMBL | tr|I1M8H0|I1M8H0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G08500.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00213 | 179401 | 183543 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000213s00016102.1 | PF04765.8 | DUF616 | 143 | 436 | 1.00E-111 |
| Glyur000213s00016102.2 | PF04765.8 | DUF616 | 143 | 436 | 1.00E-111 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.540 |
| SRR1783600 | control | 11.717 |
| SRR1783602 | moderate drought stress | 8.305 |
| SRR1811619 | moderate drought stress | 8.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.865 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.518 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.840 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.321 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.661 |
| SRR2868004 | Drought Stress (root) | 13.977 |
| SRR2967015 | Control (root) | 11.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.787 |
| SRR9715740 | Leaf | 9.656 |
| SRR9715741 | Leaf | 14.960 |
| SRR9715739 | Root | 8.618 |
| SRR9715742 | Root | 22.426 |
| SRR9715743 | Root | 20.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.856 |
| SRR8749028 | MeJA induced 9h | 27.605 |
| SRR8749029 | MeJA induced 9h | 34.663 |
| SRR8749030 | Uninduced | 31.772 |
| SRR8749031 | Uninduced | 26.557 |
| SRR8749032 | Uninduced | 20.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.974 |
| SRR8400027 | Control - Root | 22.426 |