Gene detail

Gene detail information of Glyur000213s00016101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74970.1	3.00E-73	ribosomal protein S9
NR	XP_007160798.1	7.19E-105	hypothetical protein PHAVU_001G017500g [Phaseolus vulgaris]
COG	NP_680900.1	4.00E-46	30S ribosomal protein S9 [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|P82278\|RR9_SPIOL	9.00E-100	30S ribosomal protein S9, chloroplastic (Precursor; Fragment)
trEMBL	tr\|V5N8B0\|V5N8B0_PHAVU	3.00E-105	Uncharacterized protein {ECO:0000313\|EMBL:ESW32792.1}

Sequence

Transcript Sequence

>Glyur000213s00016101.1
CTCAAATCATTATCCCCTTTTCTCAGGCTACAACATCCTTTTGTATCCACTATCCAACCAGAGCTTGAATTTGCTAAGGCAAAGTGAGTGAAGAAGTACCATGGCGGTTTCCCTACCGACTCTCACAGCTACACTCTCTTCACTCTCCTTTTCCTCTAACATCTCTNAGAAACCAAACACCCTTTCGTTCGCGAGAACCAACACGCTCTCCCTCTCGCGCGTGCCCAAAAANCCCTCCCTCGCTGTAACCGCCGTTGCCGTAGCAGCAGACGCTTCTCCGGCGGAACTGGAAAGGCAAGAAATCAAGAAACACGTGAAGTCGAGGCTTCCCGGTGGATTCGCCGCTCAAACAATCATCGGCACCGGTCGCCGGAAGTCCGCCATCGCTCGCGTTGTTCTCCAAGAAGGAACTGGCAAAATCATCATCAATTACCGTGAAGCCAAGGAATATCTTCAGGGAAATCCNTTATGGCTTCAATACATTAAGGTCCCCTTAGTAACTTTGGGATATGAAACTAGTTATGATGTGTTTGTCAAAGCTGAGGGCGGTGGCCTCTCTGGTCAGGCTCAAGCAATCTCCCTTGGCATCGCTCGTGCTTTGCTAAAGGTGAGTGAAGATCACAGAGTACCTTTGAGACAGGAAGGGCTTCTGACCAGAGATTCTAGAGTGGTTGAGAGGAAGAAAGCTGGTCTCCATAAAGCTCGTAAAGCCCCTCAGTTTTCCAAACGTTGAGGTTGGAATTTTACATGTATGGTCTATCTTTTTTCTTTGCTCGCCGTGTCTTTAGAGTTGGTTACTTCCGGAACTAGCGGTTGTAGGTTTCCCAAGGACTCATCCCTCATTCTCTTGATCTGTATGGAAATGGGAATTGTATGTATGTTAAGATCTCTCTCCCCTTTCACCACCAGCTAAAATACACCATTTTAGTTTTTACTTTATTGCAGGTTTCTTTCAAGACCAAAATTCGGTTGTCTTTGCTCGTCATTCCTTATGTGTATTTGTTACTGCTTTTGGCATATTGAAATGTTGGAAAATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00213	175271	177632	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000213s00016101.1	PF00380.14	Ribosomal_S9	89	210	8.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.104
SRR1783600	control	50.581
SRR1783602	moderate drought stress	40.804
SRR1811619	moderate drought stress	39.967

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.564
DRR006520	Root Summer glycyrrhizin high producing strain	35.128
DRR006521	Root Winter glycyrrhizin high producing strain	23.660
DRR006522	Root Winter glycyrrhizin high producing strain	22.914
DRR006523	Root Summer glycyrrhizin low producing strain	39.538
DRR006524	Root Summer glycyrrhizin low producing strain	38.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	126.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	125.594

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.341
SRR2868004	Drought Stress (root)	22.045
SRR2967015	Control (root)	20.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	123.947
SRR9715740	Leaf	147.659
SRR9715741	Leaf	87.574
SRR9715739	Root	48.193
SRR9715742	Root	36.007
SRR9715743	Root	35.124

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.831
SRR8749028	MeJA induced 9h	16.310
SRR8749029	MeJA induced 9h	18.887
SRR8749030	Uninduced	9.955
SRR8749031	Uninduced	4.138
SRR8749032	Uninduced	9.619

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.999
SRR8400027	Control - Root	42.747