Gene detail information of Glyur000213s00016099 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 3.00E-81 | F-box/RNI-like superfamily protein |
| NR | XP_003550361.1 | 0 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine max] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 2.00E-96 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|K7MNT6|K7MNT6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G36600.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00213 | 162445 | 165345 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000213s00016099.1 | PF00646.28 | F-box | 18 | 53 | 5.30E-05 |
| Glyur000213s00016099.1 | PF07723.8 | LRR_2 | 169 | 193 | 0.00049 |
| Glyur000213s00016099.1 | PF08387.5 | FBD | 365 | 396 | 0.0002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.664 |
| SRR1783600 | control | 7.835 |
| SRR1783602 | moderate drought stress | 9.737 |
| SRR1811619 | moderate drought stress | 9.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.043 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.910 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.369 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.921 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.389 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.038 |
| SRR2868004 | Drought Stress (root) | 20.395 |
| SRR2967015 | Control (root) | 22.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.708 |
| SRR9715740 | Leaf | 11.928 |
| SRR9715741 | Leaf | 11.417 |
| SRR9715739 | Root | 4.753 |
| SRR9715742 | Root | 6.021 |
| SRR9715743 | Root | 6.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.702 |
| SRR8749028 | MeJA induced 9h | 63.130 |
| SRR8749029 | MeJA induced 9h | 46.591 |
| SRR8749030 | Uninduced | 26.268 |
| SRR8749031 | Uninduced | 51.829 |
| SRR8749032 | Uninduced | 60.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.988 |
| SRR8400027 | Control - Root | 16.856 |