Gene detail

Gene detail information of Glyur000213s00016093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75000.1	8.00E-70	GNS1/SUR4 membrane protein family
NR	XP_004499120.1	4.36E-145	PREDICTED: putative elongation of fatty acids protein 1-like [Cicer arietinum]
Swissprot	tr\|Q9SYY4\|ELO3L_ARATH	6.00E-102	Elongation of fatty acids protein 3-like
trEMBL	tr\|I1JTE0\|I1JTE0_SOYBN	8.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G03670.1}

Sequence

Transcript Sequence

>Glyur000213s00016093.1
ATGGGATATTTCTCATTAACAGAGCCCCTGAAATATTATCTAATAGACCACCCCTCCATAGTTTGGTTCCGATGGAGCCCCACCCAATCGTGGGGCTCCACGTGGCCTTTCCTAGTAACCGCCGTGGCCACCTATGTTGTCACTGCAGTTACCCTCCACCTCGTTCTCAAAATCTTCCGGCGTCGCCGTGCCGTCCCACTTGGCCCCATCCCCGCAATCCACAGCCTCGCCATGTCACTGNTCTCAGTCACCATTTTCGCCGGCATGCTTTTCTCTGCCGGCGCCGAGATCCGTGACACAAAGTGGCTCTTGCGGCGCACAAGAACCACCCCGTTCGAGTGGTTCCTTTGTTTCCCACTCGGTATTCGCCCCTCTGGCCGCGTCTTCTTCTGGTCCTACGCTTTCTACCTCTCGCGCTTCCTCCACTTGTTGCGAACCTTCTTNGTCATTCTCCGTCACCGGAAACTCTCGTTTTTTAGGCTGTTCAACCACTCCATCCTCCTTGTGCTGGCGATTCTGTTCTCCACGCTGGTTTACTCATTGGTGTATGGGTACAGGTTCTGGNCGGAAATTGGGTTGCCCATAAGCAAGAGCTTTTCGTTCACCGTGAATTGCCAGATTCTGTTGTTGGGTTTTAACTTGGTTTGTCACGTTGGGGTGCTTTTGTTGCATTTCATGAGAGGAGGGTGTAATGGGATTGGAGCTTGGTTCTTCAATTCTGTTTTGAATGCTGCTATNCTTTTGCTNTTCTTGAANTCCTATGTGAACACGCATTGCCAAAGGAAGAATGATTCGTCTTTTGATGGAGTGGAGGAATTGTCGAAGCATGCAACCCTTATTGCTAAGTCCAATTAATTAAGACTTAGAATTTGGTTTGACTCTTGCTGCAAATTTTGTTTTTGTGTGGTTTGAGGTATTTTTGGTTGCTGCCCCGTTTAACATTCTTTTTTTTGGCCCGAGCTCCTTTAGTTTGATTAGGTCCACCTTCGTCTCTGTAAATGTTGAGACATGGGACACTAAACATTTCAAAGTTTTTGTAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00213	101073	102322	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000213s00016093.1	PF01151.13	ELO	33	171	1.70E-17
Glyur000213s00016093.1	PF01151.13	ELO	169	264	1.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.191
SRR1783600	control	1.308
SRR1783602	moderate drought stress	1.838
SRR1811619	moderate drought stress	1.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.625
DRR006520	Root Summer glycyrrhizin high producing strain	3.572
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	14.135
DRR006524	Root Summer glycyrrhizin low producing strain	13.395
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.778
SRR2868004	Drought Stress (root)	16.486
SRR2967015	Control (root)	9.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.032
SRR9715740	Leaf	9.623
SRR9715741	Leaf	26.682
SRR9715739	Root	55.208
SRR9715742	Root	127.254
SRR9715743	Root	111.445

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	135.936
SRR8749028	MeJA induced 9h	90.809
SRR8749029	MeJA induced 9h	106.255
SRR8749030	Uninduced	106.918
SRR8749031	Uninduced	84.559
SRR8749032	Uninduced	105.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.595
SRR8400027	Control - Root	10.623