Gene detail

Gene detail information of Glyur000213s00016085

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19330.2	3.00E-84
NR	XP_007136571.1	4.08E-146	hypothetical protein PHAVU_009G056200g [Phaseolus vulgaris]
trEMBL	tr\|V7ATC3\|V7ATC3_PHAVU	2.00E-146	Uncharacterized protein {ECO:0000313\|EMBL:ESW08565.1}

Sequence

Transcript Sequence

>Glyur000213s00016085.1
GTGGGGGTGTGTGTGTTGTTGCATCATGCATGTTCTTCTCTCTCTCTCTCNCTCTAGTCTCTCCCAGCGCATGATTGAAAGACCTCAACCTCCCGTATTGACGTGGCACCCACCCATTCGTCCATTCTCTCTCGTCGGGATTCATACCAACATATACCAGTAAACAATATCAATACCACTTACCACTCTCTCTCTCTTCTGTACTGTCTCTCACTCACATCGAAACGTGCCTTTTCTTTCCCCCCCCTCTCTCTCTCTCTTCTCTATCCACCCGTTTTCATTTCCATTTCTCTCCGAAAAATTCCACCGATTTTCCTCATGACACTAGCAATGCAGGATCAACTCCGCAAGCACGGTTTCGATCTGTAATTAGGAGTAATTCATTTTTCACTTTGTTTTTTTATTTATTTCATTTTAATTTTTGCTGAGTTTGGAAAAAATGCTGGAAGCAATGGAAAGTTCGGTGAATGGTGGTGGATTCTCACAGTTACAGAGCTGTGGGGATAGCAGCGAAGAAGAACTCTCTGTGCTCCCTCGTCACACGAAAGTGGTTGTAACTGGAAACAACCGCACCAAATCGGTGCTCGTTGGTCTTCAGGGCGTTGTTAAGAAAGCCGTTGGCCTCGGTGGGTGGCATTGGCTGGTTCTTACCAATGGTATTGAAGTGAAGCTGCAGAGGAATGCCCTTAGTGTGATTGAAGCGCCCACCGGGAACGAGGAAGATGACGACCTTGAATTTGAAAATATGCAGTGGAATGGATCAGATATGGCATCGGATGACACTCAAAAGTCTCACAAATCGAGGCACAGAATGCATAGATCAATAGGATCATCTCGCAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGATCCATATCTATGCCTCATGGGTGGACGAAGGTTGACTTGAGCAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTNCCAAACCCATCGAAAGAGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCGCAGCAAATGGACGAGTTGCAAGTGATTATGGGATTTGTCAAAGCTGCAAAGAGGCATAAGACTATGTGCAAATGAAGGAGTGGAAGCGAAATGGAGATATTTCTAAGTTAAATATATTGTCTATNCTAACTGAGATAATGGTTTTCTAATATGAATGAATATCCACTTTCCCCCCCTTAGTACTATGTAACATATTAGTAAGTAGTAACCTTTCGGATCTCAATTAGTAGTAGGTTAGTTATATGAGGGTTATAGAGGCTCTTTCTCTTTTGTAGCCACCTAGTTATGTAGATAACGTGACCTTGCAACTGGATCCTCAGGGGGAAGTCTCGATGGCTTCCTTTTCTAATCTTTTGATTAATGTACTGCTGACCATGGGAAGTGGGTTTTCTGAGACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00213	27114	30314	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000213s00016085.1	PF13867.1	SAP30_Sin3_bdg	160	213	5.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.477
SRR1783600	control	48.984
SRR1783602	moderate drought stress	58.133
SRR1811619	moderate drought stress	57.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.923
DRR006520	Root Summer glycyrrhizin high producing strain	54.633
DRR006521	Root Winter glycyrrhizin high producing strain	10.931
DRR006522	Root Winter glycyrrhizin high producing strain	10.517
DRR006523	Root Summer glycyrrhizin low producing strain	41.478
DRR006524	Root Summer glycyrrhizin low producing strain	40.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.843
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.969

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.962
SRR2868004	Drought Stress (root)	42.480
SRR2967015	Control (root)	47.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.171
SRR9715740	Leaf	20.020
SRR9715741	Leaf	19.428
SRR9715739	Root	93.326
SRR9715742	Root	64.643
SRR9715743	Root	65.267

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	106.127
SRR8749028	MeJA induced 9h	40.255
SRR8749029	MeJA induced 9h	50.934
SRR8749030	Uninduced	10.035
SRR8749031	Uninduced	3.136
SRR8749032	Uninduced	6.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.454
SRR8400027	Control - Root	122.979