Gene detail information of Glyur000212s00017533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49690.1 | 6.00E-63 | myb domain protein 84 |
| NR | KHN13020.1 | 8.58E-136 | Transcription factor RAX3 [Glycine soja] |
| Swissprot | tr|Q9M2Y9|RAX3_ARATH | 7.00E-86 | Transcription factor RAX3 |
| trEMBL | tr|K7LN20|K7LN20_SOYBN | 3.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04880.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00212 | 205015 | 206648 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000212s00017533.1 | PF00249.26 | Myb_DNA-binding | 14 | 62 | 5.00E-14 |
| Glyur000212s00017533.1 | PF00249.26 | Myb_DNA-binding | 69 | 111 | 2.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.260 |
| SRR1783600 | control | 16.324 |
| SRR1783602 | moderate drought stress | 17.201 |
| SRR1811619 | moderate drought stress | 17.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.164 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.084 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.082 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.671 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.668 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.807 |
| SRR2868004 | Drought Stress (root) | 26.306 |
| SRR2967015 | Control (root) | 33.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.036 |
| SRR9715740 | Leaf | 0.144 |
| SRR9715741 | Leaf | 0.099 |
| SRR9715739 | Root | 14.291 |
| SRR9715742 | Root | 7.452 |
| SRR9715743 | Root | 9.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.747 |
| SRR8749028 | MeJA induced 9h | 2.624 |
| SRR8749029 | MeJA induced 9h | 1.446 |
| SRR8749030 | Uninduced | 2.999 |
| SRR8749031 | Uninduced | 0.847 |
| SRR8749032 | Uninduced | 1.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.766 |
| SRR8400027 | Control - Root | 31.879 |