Gene detail

Gene detail information of Glyur000212s00017531.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65780.1	2.00E-167	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
NR	XP_004511802.1	0	PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Cicer arietinum]
COG	YP_004196118.1	1.00E-92	branched chain amino acid aminotransferase apoenzyme [Desulfobulbus propionicus DSM 2032]
Swissprot	tr\|Q9FYA6\|BCAT5_ARATH	0	Branched-chain-amino-acid aminotransferase 5, chloroplastic (Precursor)
trEMBL	tr\|I1J9H2\|I1J9H2_SOYBN	0	Branched-chain-amino-acid aminotransferase {ECO:0000256\|RuleBase:RU004517}

Sequence

Transcript Sequence

>Glyur000212s00017531.1
CCTAACTTTTCGGTTTCGTTCNTACAAGAGGAAAGATTCAGAGCATTGTTGTTGTCGTTGTTTGGAGAAAACTGAAAATGGAGAGCAGCGCCGCTCTTGCAGGCAGTCGACTGAGTTTTTCGATCTGCCCATCACCATCTCGCCACTCTCCTCATTTTCTCTCTCACGCATTCCCCTTCAGCCCTTCTCTCTCCCTCAAGTTCCAAAAGCAGTTTCCTTCCACCTCCCAGAATGTTCTGGAAGCTGCTTCTCCTCTCCGTTCTTCTGCCACTCTTTCTGATGCCTACAGTGAAACGATGGAGTTAGCCGACATAGACTGGGACAGCCTTGGATTTGGCCTTCAACCTACTGATTATATGTATTTCATGAAATGCCAACAAGGTGGAACCTTCTCTAAGGGCGAACTCAAGCGTTTTGGGAATATTGAATTGAACCCCTCCGCTGGAGTTTTAAACTACGGGCAGGGGTTATTTGAGGGTTTGAAAGCCTACCGTAAAGAAGATGGGAATATACTCCTCTTCCGACCAAAAGAAAATGCGTTACGGATGAAGATGGGTGCTGAGAGGATGTGCATGCCATCACCTAGTGTAGAACAGTTTGTGGAAGCTGTAAAGGATACTGTTTTGGCAAACAAACGTTGGGTTCCCCCTCAGGGTAAAGGTTCCTTGTATATTAGACCTTTGCTAATGGGAAGTGGAGCTGTACTTGGACTTGCACCTGCTCCAGAGTACACCTTTCTAATATATGTTTCACCTGTAGGGAACTACTTCAAGGAAGGTTTGGCCCCAATCAATTTGATTGTGGAGAATGAATTACATCGTGCAACTCCTGGAGGNACTGGAGGTGTGAAGACCATTGGAAACTATGCCGCAGTTCTTAAGGCACAGTCTGCAGCCAAAGCGAAAGGCTACTCTGATGTTTTGTACCTAGACTGTGTGCACAAGAGATATTTGGAGGAGGTTTCTTCCTGCAATATTTTTGTTGTTAAGGGTAACATTATTTCAACTCCAGCTATTAAAGGGACTATCCTACCTGGCATTACTCGAAAAAGCATAATTGATGTTGCTCGAAGCCAAGGGTTCCAGGTTGAGGAGCGATCAGTGTCAGTGGATGAATTGCTAGATGCTGATGAGGTCTTCTGCACGGGAACAGCTGTGGTTGTATCACCTGTTGGCAGTGTTACTTATCTTGGCAATAAGGTATCTTATGGAGATGGTATTGGAGTGGTTTCACAGCAACTTTATACTGTCCTTACCAGATTACAGATGGGTCTTACGGAGGATGAGATGAATTGGACTGTTGAGCTGAGATAAGCACATTAAGAATAGCTTGCTCTGCATCTTTTGCTGGTATCTCATTGAATGTCCGGGCTCTAGTAGTTGTATTTTGAATTTTGCTTTCATATCCGCTGAGCTGTTGTAGATATGTGGTGTGTGTATTGCTATTGAATGCCAATAGCAAGCACATGAAAGACAATTCTACATATTTATTTTCTTGCCAGCTGGGGAAGTCATTATCAGTGGATTAGTTATCCTTTTTTGCTTGAAAAATAGACGTATTCTAGCCGTAATTGTCTACCCTAGAGATTAGATGAGGTTTTTTTGACGAATTTTTTGATGGATGGAGAGGTAAAAAGGGACCATGGNTTAGGTGTCTGAATTAACGCAGAACATAAAAGACGGTGCGGAAGCAGGAGGATATTATCGAAAGATTTAGAGCTGTGTTTCTTACTGGTTATTTTCCTTCCCGTGTTAGGACACACTAATCTGCGAAATGGCTTATACTTGGAAAAGTCTGCAACTCACAAGGCTAACGTTGTTGTCGAAATTAAAAGAATCGTGCTTATTATGGATTCGATTAACACAGGCAACGAAACAAACAATGCATCGTGGAGTGTGACGTGACCTCTTGTATTTTGAATTCCACCCGAACAACAATTCAATGAGCAAGTTTACTGCTATAGCACACGTGCGAGTGGACATCTTGGAACATGCTGAACGATTCTCACGCTCATTCTACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	192547	197247	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00826	E2.6.1.42, ilvE	EC:2.6.1.42	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280
			Valine, leucine and isoleucine biosynthesis	map00290
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009081 branched-chain amino acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004084 branched-chain-amino-acid transaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017531.1	PF01063.14	Aminotran_4	148	368	2.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.484
SRR1783600	control	25.759
SRR1783602	moderate drought stress	18.680
SRR1811619	moderate drought stress	18.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.687
DRR006520	Root Summer glycyrrhizin high producing strain	26.441
DRR006521	Root Winter glycyrrhizin high producing strain	16.268
DRR006522	Root Winter glycyrrhizin high producing strain	15.698
DRR006523	Root Summer glycyrrhizin low producing strain	22.779
DRR006524	Root Summer glycyrrhizin low producing strain	23.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.881
SRR2868004	Drought Stress (root)	48.097
SRR2967015	Control (root)	36.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.063
SRR9715740	Leaf	23.219
SRR9715741	Leaf	27.660
SRR9715739	Root	34.650
SRR9715742	Root	30.407
SRR9715743	Root	31.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.395
SRR8749028	MeJA induced 9h	20.892
SRR8749029	MeJA induced 9h	19.006
SRR8749030	Uninduced	8.290
SRR8749031	Uninduced	6.798
SRR8749032	Uninduced	7.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.194
SRR8400027	Control - Root	42.851