Gene detail

Gene detail information of Glyur000212s00017527.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37790.1	4.00E-59	Homeobox-leucine zipper protein family
NR	KHN36326.1	1.03E-149	Homeobox-leucine zipper protein HAT22 [Glycine soja]
Swissprot	tr\|P46604\|HAT22_ARATH	2.00E-93	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|I1LH34\|I1LH34_SOYBN	9.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G04840.1}

Sequence

Transcript Sequence

>Glyur000212s00017527.1
CAGTAAGAGTACTGGGGCTCAAATTAATAATAATGGTCAACCTATGTAGGAGATATACAAGGGGGAGGAGGGGACTTTTCATTATTTCTTTCCGATATGAGTATCAAGATTCGTTTCCCTACTCATTCCTCCCTTTGATTAATAATAATTCATAGCCACCCACCCACCCACCCAACGCCCCCACAAAAGTCTTGTATTCATTCTCTACCCCTCTCTTCTTCTTAAGACCCTTCCAAGGCCTTTTAAAAACCATATATACCATCATCCAATTTTCCTAACTCACACCACCACCGCCTTAATTGGTATTCTCTCAAATGGGTCTTGATCAGGATTCCAATAACTTAGGCCTTCACCTTGTTCTAGGTTTATCTTTGAACACAAAGGAAACCACCAACAACACTAATTATCCTCCAATATCAAGAAGCAGTACCAAGGCTAATGATAATAATCTTAAATGTCTTAAGCCAACGAACGAGCCATCGTTGACGTTGGGTCTCTCCGGTGAGAGTTATAACCACCAACAGCAGCAGCAGGTGCAGGTGTTGGCCAGAAATAATAAGATATTGGATGGGAACAACGACAACAACAACAAGANTTATAATTATTGTGAGGTGGAGCCTGTTGAGTTATCTAGACAAGCTTCTTCACCTCACAGCGTTGTTTCGTCTTTCTCAAGTGGGAGGGTCGTGGTGAAGAGGGAGAGAGACCTCAGCTTTGAAGAGGTAGAGCTNGCAGAGGCAGAAGAGAGAGTTTCTTCAAGAGTGAGTGATGAAGATGAAGATGGCACGAATGCCAGAAAGAAACTCAGGCTTACCAAAGAACAATCTGCACTTCTAGAAGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAAAAGCAAGCTTTAGCGAGGCAGTTGAATCTACGGCCACGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGGAGGCTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCACAGCCCTTATACATGCCTATGCCTGCAGCCACCCTCACCATGTGCCCCTCTTGCGAGAGGCTCGGTGGCGTCACCGAAAGCGGTTCCAATAAGAGTCCCTTCAGTACCATGGCTCCCAAGCCTCACTTCTTCAATCCCTTCACCAATCCTTCTGCAGCATGTTGATTATGGTTCAATTTTAACTTTTCGCAAGGCCAAGAGTAAAAAAAAGAAAAACTGAGAGAAAGGGTATTCCCCACAACCATTGTATTTTTTTGGTTGAGGAATACGTCTAGCTAGGAAAACGTTGTAATTAATTAGCTAAAACTGTAGAAAATAGTAACTGCTGATTAGAATTACTTTTTGCCTTTTTCTTCCTCTATTGTATGTTTATAAATCAATATAGAATACATCGATCGAATATCTAAAGAAAATAGTTTTTTTTATTGTTGATGTTTTTAGATTCTCATGGTAAGTGTATACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	165801	168001	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017527.1	PF00046.24	Homeobox	161	215	2.90E-16
Glyur000212s00017527.1	PF02183.13	HALZ	217	260	1.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.358
SRR1783600	control	18.312
SRR1783602	moderate drought stress	8.594
SRR1811619	moderate drought stress	8.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.320
DRR006520	Root Summer glycyrrhizin high producing strain	45.853
DRR006521	Root Winter glycyrrhizin high producing strain	149.394
DRR006522	Root Winter glycyrrhizin high producing strain	145.713
DRR006523	Root Summer glycyrrhizin low producing strain	150.903
DRR006524	Root Summer glycyrrhizin low producing strain	153.448
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.416
SRR2868004	Drought Stress (root)	25.815
SRR2967015	Control (root)	20.898

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.863
SRR9715740	Leaf	38.046
SRR9715741	Leaf	25.667
SRR9715739	Root	6.797
SRR9715742	Root	13.711
SRR9715743	Root	12.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.019
SRR8749028	MeJA induced 9h	23.345
SRR8749029	MeJA induced 9h	26.145
SRR8749030	Uninduced	2.292
SRR8749031	Uninduced	6.683
SRR8749032	Uninduced	6.748

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.111
SRR8400027	Control - Root	76.562