Gene detail

Gene detail information of Glyur000212s00017518.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G65720.1	nitrogen fixation S (NIFS)-like 1
NR	XP_004511800.1	PREDICTED: cysteine desulfurase 1, mitochondrial-like [Cicer arietinum]
COG	NP_360367.1	cysteine desulfurase [Rickettsia conorii str. Malish 7]
Swissprot	tr\|O49543\|NFS1_ARATH	Cysteine desulfurase 1, mitochondrial (Precursor)
trEMBL	tr\|I1LH30\|I1LH30_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G04800.1}

Sequence

Transcript Sequence

>Glyur000212s00017518.1
ATGACATCGAAGCTAGTTGCTTCCAACCTCCGCCAGTACCTCACAAAATCCACCCATCTCTTCCGCCGCCAATTGCTGTCGACGGCTGCGGCAACGGCGACGGCGACGGAGCCCCAACAACACCATGAGGAATACGGGGGAATCACGATGAAGGGTGTGAAAATCTCGGGAAGACCCCTTTACCTGGACGTGCAAGCGACATCACCGGTGGACCCTAGGGTCCTCGACGCCATGCTCCCCTTCTATCTCTCTCGCTATGGGAACCCTCACTCTCGCACCCACTTCTATGGNTGGGAATCCGACGACGCCGTTGAGCACGCCCGCGCTCAAGTTGCGTCCCTCATCAGCGCTTCCCCCAAAGAAATAGTCTTTACCTCCGGCGCCACCGAGTCCAACAACATNTCCATCAAGGGTGTCATGAATTTCTACAAGGAGAAGAAACGCCACGTCATCACGACGCAGACGGAGCACAAGTGCGTGCTCGACTCTTGCCGCCACCTCCAGCAGGAGGGTTTCGATGTTACCTATCTCCCCGTTGAGGCTGATGGGTTGGTTGATTTGGAGAAGCTTAGGGCGGCGATTAGGCCCGATACCGGGCTTGTTTCTGTTATGGCGGTGAACAATGAGATTGGGGTGGTTCAGCCGATGGAGGAAATTGGGAAGATTTGCAAGGAGTTCAGTGTTCCCTTCCACACTGATGCTGCTCAGGCTTTGGGGAAGATTCCCGTTGATGTGGATAAGTGGAACGTGAGTTTGATGTCCCTTAGTGGGCATAAGATTTATGGGCCAAAAGGGGTTGGGGCATTGTATCTTAGGAGGAGACCAAGGATTCGTGTGGAGCCTCAGATGAATGGTGGTGGACAAGAGAGAGGGATTCGGAGCGGGACGGTGCCTACCCCTTTGGTTGTGGGCATGGGTGCGGCCTGTGAGGTGGCCATGAAGGAGATGGAATATGATGACAAAAGAATCTCTGCATTGCAGCAGAGGCTGCTTAATGGGATTAGGGAAAAGCTTGATGGGGTTGTGGTGAATGGGAGCATGGAAAGGCGCTATGTGGGGAATCTGAACTTGTCGTTTGCCTATGTTGAAGGGGAGAGTCTGCTCATGGGGTTGAAGGAGGTAGCTGTCTCCAGTGGCAGTGCTTGCACTAGTGCTAGTTTGGAGCCTTCCTATGTCTTGAGAGCATTAGGAGTGGATGAGGACATGGCTCACACTTCTATTAGGTTTGGTATTGGGAGGTTCACTACAGAGGCGGAAATTGACAGGGCAATTCAGCTCACGGTTCAGCAGGTGGAGAAGTTGAGGGAGATGAGTCCGCTTTATGAAATGGTTAAGGAAGGGATCAACATCAAGGATATTCAATGGGCACAGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	116355	117731	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04487	iscS, NFS1	EC:2.8.1.7	Thiamine metabolism	map00730
			Sulfur relay system	map04122

Gene Ontology

biological_process

GO:0006534 cysteine metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

GO:0031071 cysteine desulfurase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017518.1	PF00266.14	Aminotran_5	61	422	2.00E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	83.424
SRR1783600	control	83.769
SRR1783602	moderate drought stress	111.801
SRR1811619	moderate drought stress	111.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.069
DRR006520	Root Summer glycyrrhizin high producing strain	67.202
DRR006521	Root Winter glycyrrhizin high producing strain	61.775
DRR006522	Root Winter glycyrrhizin high producing strain	59.888
DRR006523	Root Summer glycyrrhizin low producing strain	53.303
DRR006524	Root Summer glycyrrhizin low producing strain	52.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.748
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.425

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.743
SRR2868004	Drought Stress (root)	70.000
SRR2967015	Control (root)	70.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.646
SRR9715740	Leaf	92.854
SRR9715741	Leaf	92.810
SRR9715739	Root	96.647
SRR9715742	Root	90.868
SRR9715743	Root	87.229

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.021
SRR8749028	MeJA induced 9h	20.607
SRR8749029	MeJA induced 9h	20.375
SRR8749030	Uninduced	13.985
SRR8749031	Uninduced	9.269
SRR8749032	Uninduced	8.752

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.783
SRR8400027	Control - Root	68.232