Gene detail

Gene detail information of Glyur000212s00017512

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65710.1	0	HAESA-like 2
NR	XP_006573682.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2-like [Glycine max]
COG	YP_004775215.1	4.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGX3\|HSL2_ARATH	0	LRR receptor-like serine/threonine-protein kinase HSL2 (Precursor)
trEMBL	tr\|K7K4S9\|K7K4S9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40560.2}

Sequence

Transcript Sequence

>Glyur000212s00017512.1
GCCGTTGTTGGGTGGAATGAGTCCAATCTTAAATAAATGTACTGCTCATTCCTTCTCACTTTCTTGAAAATAGAAAATGACCCCACATTTTTCTTCTCTACATAGCCAATCCCAGAGAAGCAAAGAGACATCAATAAGAGGAAAGAGTATTGGTTCCCGATTCAAATTGATCCACACAGAACTTGGTCAATATGTTCTTCTCCCAATCATCTTGCATAGCATAGCTCCCTTTGGTGGTAACTAGGGAACGTAANGCATCATCATAGCCCGTGGCAAGTGCTATCCAGCAGAAAGCGATCCCCGAGAATGATTCTTCTTCTGGAATTATGCCTTTTACACTCTCCGTGTGGCTTATAGTGTCCTATACTCTGCTTCTGGCTCCGCATGCAAAATGCTTTTAAAGCTTCTTGCTTTTTCCCACTCCTCTCCCAAATTTGAAAACACGCCAATGCGAGTCACGTTCCCCACCCCCTGCAGTTGCAATTGCAACGTTGTTTCTCCCATCAATATCAAACCGCTGAAAAGCAGTGAATGCGCACCCTTGTGAGTTCCACATCGCTCACTGTCGTGTCNGCTTCCAACTTGTCACCATCTCCATGCATCATGAATAAGAACAAGGACTCCATGCGTTCCTTGTTCTCTCACTCACGAGGAAAAGCACTAGGCAGTAATGTGAGTAACGCATACACCAAAAACTAGAAGGTCCCTCCCCTACAATTCACAAACACCTTCCTCAAAGATTTCAGCATTCCCATTCTCTCACACACTCACCAGTTCAAAATTGTACAAGATGCCTCAACTCATTCTCACCATTTTTCTACTACTGTGTTTACTGTTCTCAAGTGGAAGCGCCTTATCACTCGCGAGAGATTCTCAAATTCTGTTGCAGGTGAAGAACACTCAGCTTGAAGATAAAAACGAGTCTCTCAAAAACTGGGTGCAAAACAGAGAACACAACCCTTGTAACTGGACCGGCATTACCTGCGACGCACGAAACANATCGGTTGTTTCAATTGACCTCTCTGAGACTGGAATTTACGGCGATTTTCCCTTTGGTTTCTGTCGCATTCAGACCCTCAAAACCCTCTCTCTTGCTTCGAATTTTCTCGGCAATGCTATCTCCCCACAGTCTCTGTTTCCCTGTTCCCGGCTCCGTCACCTGAACCTCTCCGACAATTGCTTCGTGGGAACTTTGCCGGAGTTCACGCCGGAGTTCGCCGAGCTGAGACAACTCGACCTCTCGAAGAACAACTTCACCGGCGATATCCCGGCAAGTTTTGGCCGGTTTCCACAACTGAGGGTGCTCGTTTTGTCCGGAAACCTGCTCAACGGAACCATCCCTCCCTTTTTAGGCAACCTCAGCGAGTTAACTCGGTTGGAACTCGCTTACAACCCGCTGAAACCAGGTCCTTTACCTTCCCAGATAGGAAACCTTTCTAAGCTTGAAATTCTGTACCTCGCCCAATTAAACCTCATAGGAAACATACCACCCTCCATAGGGAACCTTGTCTCGCTCAAAAACTTCGATTTGTCTCAAAACTCCTTGTCGGGTAAGATCCCAGACAGCATTTCGGGCTTGAAAAGCGTGGAGCAAATTGAGCTATTCGAAAACCACCTTTCCGGTGAGTTACCCCTCGGTTTAGGAAACCTCACCAGTTTGGCTCTGTTGGACCTCTCTGAGAACGCCCTCACCGGAAAATTGGCAGAAGCTATCGCTTCACTNCAGCTCTATGTTCTCAACTTGAACGACAACCTTCTCAGTGGAGAAATACCGGAGTGTTTAGCTTCAAACCCGAATTTGCAGACTCTGAAGCTCTTCAACAACAGCTTTTCTGGGAAACTGCCACAGGATCTGGGGCGAAACTCTGATATAGAGGAATTCGATGTCTCAACCAATGGCTTCATTGGTGAGTTGCCAAAGTTCCTCTGCCAAAGGAACAAGCTCCAGCGACTCATCACATTCACGAATCGCTTCACCGGAAACCTGCCTGACCGGTATGGCGAGTGTTATACCCTCGAATATGTCAGAATCGAGAACAACCAACACTGTGGTCCGGTGCCACCGAGATTCTGGAGCCTTCCACGGCTTCAGTTTCTGAAAATGGACAACAACAGGTTCGAGGGTTCACTCTCGGGTTCAATCTCCAGAGCCAGGGGAATCACCAAACTGATTCTATCCGATAACAGCTTTTCCGGTCAGTTCCCGGCGGGAATCTGCGAACTCGACCAGCTCGTGGAGATTGACATCGGCAACAACCGGTTTACTGGTGAAGTCCCAACCTGCATAACCGGTTTGAGGAAGTTGCAGAAGCTTAAGATGCATCAGAACATGTTCACCGGCGAGATTCCCGGTAACGTAACCTCCTGGACTGATTTGACCGAGTTGAACCTGTCCCACAACCGGTTCACCGGTTCAATCCCACCGAAACTCGGCGACTTGCCGGACCTGATATACCTTGACCTCGCCGTTAACTCTTTGACGGGGAAGATTCCGGTGGAGTTGACGAACCTGACGCTGAACCAGTTCAACGTCTCCAACAACAAATTGTACGGGGAGGTTCCTTCGGGTTTCAACCAACAAGTTTACTTCTCGGGTCTAATGGGAAACCCGGGTCTCTGTAGCCCAGTTATGAAAACCCTGCGTCCCTGTTCAACACATAACAGACCCTTTTCCCTGGTTGCTATAACCGTTTTAGCCTCTTGCGTTTTGCTCCTTCTGGTGTCCCTCTTGTGGTTCGCGAAGAGAAAGTCGCCTCCTTTTGTCGGCAAATCCAAGCGCGCCTTCATGACAACCGCGTTTCAGAGAGTGGGGTTCACTGAGGAAGATATAGTCCCTTTCTTAACCAGCGAGAACGTGATTGGAAGGGGTAGTTCGGGTCAAGTGTACAGGGTGAAGCTCAAGACGGGGCAGATAGTGGCAGTGAAGAAGCTATGGGGTGGTAGTACACAAAAACCAGATACGGAATCTGCGTTCAGGTCGGAGATTGAGACATTGGGTAGAATTAGACATGCTAATATTGTGAAGCTGTTGTTTAGTTGCAGTGCTGATGACTTCAGAATATTGGTGTATGAGTACATGGTGAATGGGAGTCTTGGTGATGTTTTGCATGAGAACAAGTGTGGGGAGTTAATGGATTGGTCCAAGAGGTTCACAATTGCGGTGGGTGCGGCTCAGGGGTTGGCTTATTTGCACCATGATTGTGTGCCGGCTATTGTTCACAGGGATGTGAAGAGTAATAACATATTGCTTGACCATGANTTTGTGCCTCGTGTAGCTGATTTTGGGCTGGCCAAGACATTGAAGCGTGAGGCCAGTGAGGGTGCTATGTCCAGGGTTGCTGGATCATATGGTTACATTGCTCCAGAATATGCTTATACCCTGAAAGTGACTGAGAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTGATGGAATTGATCACTGGGAAGAGGCCAAATGACTCTTCCTTTGGTGAGGACAAAGATATCGTTAAGTGGATTACTGAGACTGCTTTATCATCTTCTCCTCAAGGAGGAAGTGGTAATATTGGAGGAGACCAAGGTTGTATTATGACCCAGATTGTGGACCCAAGATTGAACCCAGCCACTTGTGATTATGAAGAGGTTGCGAAGGTCTTAAATGTGGCTCTACTTTGCACATCAACGTTTCCCATTAGTAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCACAAACTGGCTCGTCCCAAGTCATGATGCTGGCTGCTGCATTGGGCTTTCAAAGCCCTCTCCACTATAGGACCCAAATTTTGTACTATTGCAGTAGCGGTAGGCACCCCATGAAAGCAATCGATGGCTTTTTATGGTGGAAAGCTTTCAAGTTTAGAAGGAAGTTCTGAACATATTTTTAGTAAGGACTTAATAGCTATTATGAGTGGTTGTTTAGTTACTCATTGTATGTAAATCTTCTTGTATAGATGATGGTGTGTGAATCTTGTCTTGATCAAAGCAAAAGATGAGTGAATTGGGAACTTACATTGTTACAGCCATTCTATACAGAAAAAAAAAAGGAAAAAA

Protein Sequence

>Glyur000212s00017512.1
MPQLILTIFLLLCLLFSSGSALSLARDSQILLQVKNTQLEDKNESLKNWVQNREHNPCNWTGITCDARNXSVVSIDLSETGIYGDFPFGFCRIQTLKTLSLASNFLGNAISPQSLFPCSRLRHLNLSDNCFVGTLPEFTPEFAELRQLDLSKNNFTGDIPASFGRFPQLRVLVLSGNLLNGTIPPFLGNLSELTRLELAYNPLKPGPLPSQIGNLSKLEILYLAQLNLIGNIPPSIGNLVSLKNFDLSQNSLSGKIPDSISGLKSVEQIELFENHLSGELPLGLGNLTSLALLDLSENALTGKLAEAIASLQLYVLNLNDNLLSGEIPECLASNPNLQTLKLFNNSFSGKLPQDLGRNSDIEEFDVSTNGFIGELPKFLCQRNKLQRLITFTNRFTGNLPDRYGECYTLEYVRIENNQHCGPVPPRFWSLPRLQFLKMDNNRFEGSLSGSISRARGITKLILSDNSFSGQFPAGICELDQLVEIDIGNNRFTGEVPTCITGLRKLQKLKMHQNMFTGEIPGNVTSWTDLTELNLSHNRFTGSIPPKLGDLPDLIYLDLAVNSLTGKIPVELTNLTLNQFNVSNNKLYGEVPSGFNQQVYFSGLMGNPGLCSPVMKTLRPCSTHNRPFSLVAITVLASCVLLLLVSLLWFAKRKSPPFVGKSKRAFMTTAFQRVGFTEEDIVPFLTSENVIGRGSSGQVYRVKLKTGQIVAVKKLWGGSTQKPDTESAFRSEIETLGRIRHANIVKLLFSCSADDFRILVYEYMVNGSLGDVLHENKCGELMDWSKRFTIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHXFVPRVADFGLAKTLKREASEGAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDSSFGEDKDIVKWITETALSSSPQGGSGNIGGDQGCIMTQIVDPRLNPATCDYEEVAKVLNVALLCTSTFPISRPSMRRVVELLKDHKLARPKS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	98799	103313	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017512.1	PF08263.7	LRRNT_2	25	66	3.20E-09
Glyur000212s00017512.1	PF00560.28	LRR_1	120	138	0.23
Glyur000212s00017512.1	PF13855.1	LRR_8	144	203	1.80E-07
Glyur000212s00017512.1	PF00560.28	LRR_1	241	263	0.56
Glyur000212s00017512.1	PF00560.28	LRR_1	529	548	0.023
Glyur000212s00017512.1	PF00069.20	Pkinase	687	900	1.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.079
SRR1783600	control	15.111
SRR1783602	moderate drought stress	10.250
SRR1811619	moderate drought stress	10.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.397
DRR006520	Root Summer glycyrrhizin high producing strain	12.220
DRR006521	Root Winter glycyrrhizin high producing strain	0.768
DRR006522	Root Winter glycyrrhizin high producing strain	0.770
DRR006523	Root Summer glycyrrhizin low producing strain	10.292
DRR006524	Root Summer glycyrrhizin low producing strain	10.345
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.995

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.389
SRR2868004	Drought Stress (root)	10.295
SRR2967015	Control (root)	11.778

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.620
SRR9715740	Leaf	6.168
SRR9715741	Leaf	4.804
SRR9715739	Root	16.674
SRR9715742	Root	45.186
SRR9715743	Root	39.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.364
SRR8749028	MeJA induced 9h	1.688
SRR8749029	MeJA induced 9h	1.130
SRR8749030	Uninduced	0.408
SRR8749031	Uninduced	0.678
SRR8749032	Uninduced	0.631

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.004
SRR8400027	Control - Root	30.642