Gene detail

Gene detail information of Glyur000212s00017507

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37850.1	2.00E-39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	ACN21641.1	2.08E-143	putative basic helix-loop-helix protein BHLH17 [Lotus japonicus]
Swissprot	tr\|Q9T072\|BH025_ARATH	5.00E-55	Transcription factor bHLH25
trEMBL	tr\|C0JP22\|C0JP22_LOTJA	8.00E-144	Putative basic helix-loop-helix protein BHLH17 {ECO:0000313\|EMBL:ACN21641.1}

Sequence

Transcript Sequence

>Glyur000212s00017507.1
CTTCTGCGTAGGGGAGCGGAAGGAATTGACTAGAAACGCTATAAAGGGGATAGCAAAGCAAGTGTTGTTCTGTGCCAAATTTGAATAGCAGTGCTCTCCCAAATTGTGAAACCAAAAAAGTGTTAATTCAATATATCAGCAGTGACCGGTAGTTATGGTTATGGAGAAATTAAACACATCCACGGACGCATCAGCAACCAGCTGGTTATCTGATTTGTTGTTGGAGGAAATTGAGGATTGCAATTTGTTTCAACAATGCCACGGTCCGAACTTGCTTGGCGGTGATGAAGAAGAGTTACTTTCACATGACATAGTGAGTGCCCTGCAGCAACCTCTGTCTTCGGAAAGTTACTCTTCTTNTCCTGTTTCCAATTCCGAAACTCTCATGAATTCACCCACTGAAGAAACGAGTTTGGAGAGACCCACCAAGCAGCTGAAAACCAAACACACTACTACTTTGCCTCATGAACTTTCCCCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTTCTCCCTGCACCTCCCAGATTCTGTCTTTTGACAACTCAAACTCGCCATCCTCTGCAAACACCACACACTTTTATGGGTTTGATAATTGTACCTTAAACCCAAAACAGAACGAGGTTGTTCCGTTGACACCGGCACAACAACTTCGAAACATGAACTTCACGGGTCAAACACGAAAAGGGTCATCGGAAAACCAGAACCTTGAAACTGTGAATCCGCAGGGTCAAGGGACCAAGAGGTCTGTGGCTCACGCTCAGGACCACATCATCGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTCGCAGCTCTTATTCCCGGATTAAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAATCAAATACGTGAAAGGGCTTCAAGAACGTTTGAAATTACTGGAGGAACAGAACAAGAACGGTGCGGTAGAGTCTGTTGTGGTGGTTAACAAACCACAGCTCAGCAGCGACGATCATTCATCGACCTCGAGCGATGATGGCTCTGAGGCTGCAAGTGGTGGCAATAACAACAACAATAACAGCGAAGCACAGCCACTCCCCCATGTGGANGCAAGAGTGTCAGAGAAGGACGTGCTCCTTCGGATCCACTGCCANAAGCAAAAGGGGCTTTTGCTCAAAATACTAGTCGAGATTCAAAACCTTCACCTCTTTGTTGTCAATAGCAGTGNCCTACCTTTTGGGGATTCTATCCTTGACATAACCATCGTTGCTCGGATGGACACAGGCTACAATTTGACCANAAATGATCTTGTAAGAAACCTACGCGTGGCTGCATCGAGATCCATGATCATTGATCCTAATTCTGTCTCGCAAGTGACTGATATAGAAACTGCAGCTAGCAAAAATGACATCAACGGAGGAAACCTGGACAAGTTGGTTGAACCAGAGGATTACAATTTCATCAACCAATCCAACACAAACGAGGTAGAGGGAAGTTTCCCATCTCATCGTGNTGTAGTAGTAGCTCCTCTGCAACAAGAGCATAACTTGCAACAAGGGTCTTTCTCTGCCGGTAGCCATANCTCCAGCAGCACCATGAGCAATTCCTCTGGGGATGTTAGCAGCTATATTGAGAGGCCTTCCAAGACACTCAAGACCGGCCCTTCAAATTACTCTGCTAACAACACCNGGTACCTCCCACAAAAGAAGGATTCTCATTCTTCCCTCTCCTACATTCTCTCCTTTAACAACGAGAGTTCAGAGCCGATATTGAACATTGATTCCACCTTGAAGCCAAAAGGCAAGGTTGTGAATAATCATGGGAGGTCTTTGCCCTCAAAGGGGTCCTTGAAAAAAGAACCCAAAAGCAGTANTCAGGAGAGCAAGAAGACTGATTCAGTGGCCAGATCTCATCATCACCATGCTCAAGATCACATAATTGCTGAGAGAAAGAGGAGAGAAAAAATCAGCCAGCAGTTCATAGCTCTTTCAGCACTTATTCCAGACTTGAAAAAGATGGACAAGGCCTCTGTTCTGGGGGATGCTATAAAGCACGTGAAACAGCTTCAAGAGCAAGTGAAGCTACTGGAAGAACAGGCCAAAAGGAAAAGCATAGAATCGGTGGTATATGTTGAGAAATCAAAGTCCTCTGCTGCAGAGGAAGATGTCTCAGACGACACCTCGTCAAATTCTGGCAAAGGAAACTCCTCATGCGACCCTTCAAAAACAACAAATCTATCGTCACAAATGCCAGAAGTTGAGGCAAGGGTNTCAGAGAAGAACGTGCTGATCCGAATCCACTGCGAAAACCAAAAGGGAGTGTTGATGAACANAATCAAAGAGATAGAGAACCTTCATCTATCAGTAACCAATAGCAGTACATTGCTTTTCGGAACCTCCAAACTGGACATAACCATCATAGCAGAGATGGATGAGGAGTTCAGCCTAAGCGTGAAGGAGCTAGCCAGAAACCTTCAAGGAATGGAGGATTCCACCTTGTTTCACCAATACCCGATGGATTATTCACTTGATGACTTTGACTTCCAGTCTACTTTCTCGGTGTCCCCAGAGACAGAGAGTGATGATCAGTCCTTTTATCGGTATTTCAACTTCGAAACCACACCAAATTGTTTCCCGGTTAGTGAAAGTNCTGATGATGAGTCGGTTGCCCTTGCCCCAGCAAGTCGACCAACCAAGAAGCTCAAGTCCAATGACTGGATTGTCCCCAACACCAACACCAAGCCCAAGCCTTCTTCCTCTCCATCAGCCCAACTCATTTCTTTTGAGCATGCTTCCCAGCAATTTTACAACCTGCAGGATTCCGGTATAAAGCCTAAAGTGGTGAAGAAGGGGTGTAATGAAAACACGGGTTTTGNAGCTCTGGTTTCTCAAGGTTCATATGAGGACAAATGTTTCTCAAACTATGATAATGGAGCGAATCAGCAGGTCGCCACCACCACCACTTGCAGAAACCCAACCCAAGCTCAAGAGCACATGGACAAGGCTTCTGTGTTGGGAGATGCGATCAAGTATGTGAAACAGNTGCAGGAGAAGGTGCAGACTCTGGAGGAGAAAGCAGCCAAGAAGAAAGCTGGATCAACAGTCCTAGTGAAGAGATCTATTATCTTCACCGACGATATTGATAGCTCTTCCAATGACAGCAACTGCGAACAACCNCTCCCCGAAATCGAAGTAAGAGTTTGCGGCAATGACGTGCTCATCAAGCTTCAATGCCACAAACACAGTGGCCCTGCGGCTACGGTTCTCCGCGAATTAGAAAAGCTTCATCTCACTGTCCACAGTAGCAGCTTTTTACCCTTCGGAAACAACATTGTCGATGTAACCATTGTTGCTCAGATGAAGAAGGAAAACTGCATGACCGCAAAGGATCTCCTAGGAAGCCTACGGCAGGCTTTGAGGCAGTTCAATCAATTTGAT

Protein Sequence

>Glyur000212s00017507.1
MVMEKLNTSTDASATSWLSDLLLEEIEDCNLFQQCHGPNLLGGDEEELLSHDIVSALQQPLSSESYSSXPVSNSETLMNSPTEETSLERPTKQLKTKHTTTLPHELSPSSSSPSPSPSSPCTSQILSFDNSNSPSSANTTHFYGFDNCTLNPKQNEVVPLTPAQQLRNMNFTGQTRKGSSENQNLETVNPQGQGTKRSVAHAQDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKGLQERLKLLEEQNKNGAVESVVVVNKPQLSSDDHSSTSSDDGSEAASGGNNNNNNSEAQPLPHVXARVSEKDVLLRIHCXKQKGLLLKILVEIQNLHLFVVNSSXLPFGDSILDITIVARMDTGYNLTXNDLVRNLRVAASRSMIIDPNSVSQVTDIETAASKNDINGGNLDKLVEPEDYNFINQSNTNEVEGSFPSHRXVVVAPLQQEHNLQQGSFSAGSHXSSSTMSNSSGDVSSYIERPSKTLKTGPSNYSANNTXYLPQKKDSHSSLSYILSFNNESSEPILNIDSTLKPKGKVVNNHGRSLPSKGSLKKEPKSSXQESKKTDSVARSHHHHAQDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAIKHVKQLQEQVKLLEEQAKRKSIESVVYVEKSKSSAAEEDVSDDTSSNSGKGNSSCDPSKTTNLSSQMPEVEARVSEKNVLIRIHCENQKGVLMNXIKEIENLHLSVTNSSTLLFGTSKLDITIIAEMDEEFSLSVKELARNLQGMEDSTLFHQYPMDYSLDDFDFQSTFSVSPETESDDQSFYRYFNFETTPNCFPVSESXDDESVALAPASRPTKKLKSNDWIVPNTNTKPKPSSSPSAQLISFEHASQQFYNLQDSGIKPKVVKKGCNENTGFXALVSQGSYEDKCFSNYDNGANQQVATTTTCRNPTQAQEHMDKASVLGDAIKYVKQXQEKVQTLEEKAAKKKAGSTVLVKRSIIFTDDIDSSSNDSNCEQPLPEIEVRVCGNDVLIKLQCHKHSGPAATVLRELEKLHLTVHSSSFLPFGNNIVDVTIVAQMKKENCMTAKDLLGSLRQALRQFNQFD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	40253	62104	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017507.1	PF00010.21	HLH	204	250	1.70E-08
Glyur000212s00017507.1	PF00010.21	HLH	586	632	4.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.023
SRR1783600	control	17.189
SRR1783602	moderate drought stress	16.002
SRR1811619	moderate drought stress	15.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.541
DRR006520	Root Summer glycyrrhizin high producing strain	15.184
DRR006521	Root Winter glycyrrhizin high producing strain	0.065
DRR006522	Root Winter glycyrrhizin high producing strain	0.127
DRR006523	Root Summer glycyrrhizin low producing strain	3.048
DRR006524	Root Summer glycyrrhizin low producing strain	3.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.127
SRR2868004	Drought Stress (root)	20.867
SRR2967015	Control (root)	22.218

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.229
SRR9715740	Leaf	19.864
SRR9715741	Leaf	4.398
SRR9715739	Root	15.879
SRR9715742	Root	21.646
SRR9715743	Root	21.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.579
SRR8749028	MeJA induced 9h	0.389
SRR8749029	MeJA induced 9h	0.440
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.104
SRR8749032	Uninduced	0.206

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.854
SRR8400027	Control - Root	20.757