Gene detail information of Glyur000212s00017503.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17830.1 | 0 | Peptidase M20/M25/M40 family protein |
| NR | XP_004511787.1 | 0 | PREDICTED: acetylornithine deacetylase-like [Cicer arietinum] |
| COG | YP_628536.1 | 4.00E-83 | M20 family peptidase [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q9C5C4|ARGE_ARATH | 0 | Acetylornithine deacetylase |
| trEMBL | tr|I1LH18|I1LH18_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00212 | 296 | 3746 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01438 | argE | EC:3.5.1.16 | 2-Oxocarboxylic acid metabolism | map01210 |
| Biosynthesis of amino acids | map01230 | |||
| Arginine biosynthesis | map00220 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000212s00017503.1 | PF01546.23 | Peptidase_M20 | 98 | 434 | 2.70E-22 |
| Glyur000212s00017503.1 | PF07687.9 | M20_dimer | 205 | 317 | 3.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.814 |
| SRR1783600 | control | 16.551 |
| SRR1783602 | moderate drought stress | 27.734 |
| SRR1811619 | moderate drought stress | 28.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.078 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.708 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.502 |
| SRR2868004 | Drought Stress (root) | 46.359 |
| SRR2967015 | Control (root) | 42.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.826 |
| SRR9715740 | Leaf | 17.328 |
| SRR9715741 | Leaf | 17.581 |
| SRR9715739 | Root | 18.423 |
| SRR9715742 | Root | 25.846 |
| SRR9715743 | Root | 25.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.942 |
| SRR8749028 | MeJA induced 9h | 28.876 |
| SRR8749029 | MeJA induced 9h | 26.932 |
| SRR8749030 | Uninduced | 23.512 |
| SRR8749031 | Uninduced | 14.203 |
| SRR8749032 | Uninduced | 20.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.943 |
| SRR8400027 | Control - Root | 42.794 |