Gene detail information of Glyur000211s00017661.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01260.3 | 4.00E-134 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | KEH18633.1 | 0 | ABA-inducible bHLH-type transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9LNJ5|BH013_ARATH | 0 | Transcription factor bHLH13 |
| trEMBL | tr|A0A072TP53|A0A072TP53_MEDTR | 0 | ABA-inducible bHLH-type transcription factor {ECO:0000313|EMBL:KEH18633.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00211 | 244788 | 246689 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000211s00017661.1 | PF14215.1 | bHLH-MYC_N | 54 | 244 | 8.90E-46 |
| Glyur000211s00017661.1 | PF00010.21 | HLH | 465 | 511 | 1.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.767 |
| SRR1783600 | control | 16.776 |
| SRR1783602 | moderate drought stress | 16.295 |
| SRR1811619 | moderate drought stress | 16.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.495 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.632 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.850 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.102 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.570 |
| SRR2868004 | Drought Stress (root) | 30.880 |
| SRR2967015 | Control (root) | 44.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 98.897 |
| SRR9715740 | Leaf | 105.779 |
| SRR9715741 | Leaf | 116.299 |
| SRR9715739 | Root | 73.665 |
| SRR9715742 | Root | 145.122 |
| SRR9715743 | Root | 122.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.546 |
| SRR8749028 | MeJA induced 9h | 68.115 |
| SRR8749029 | MeJA induced 9h | 55.822 |
| SRR8749030 | Uninduced | 37.269 |
| SRR8749031 | Uninduced | 60.349 |
| SRR8749032 | Uninduced | 76.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.067 |
| SRR8400027 | Control - Root | 25.516 |