Gene detail

Gene detail information of Glyur000211s00017657

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59750.3	4.00E-64	auxin response factor 1
NR	KHN06318.1	0	Auxin response factor 18 [Glycine soja]
Swissprot	tr\|Q0JCZ4\|ARFI_ORYSJ	6.00E-107	Auxin response factor 9
trEMBL	tr\|K7MET6\|K7MET6_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000211s00017657.1
ATGTCTGGCCTGCTTCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTACCGTCTAAGATTTTTTGCCGTGTTGTCAACATTCAGTTGTTGGCGGAGCAAGAAACTGATGAAGTTTATGCTTGTATCGCTTTGCTTCCAGAATCTGATCAAAATGAGCCCATGGATCCTGAGCCAAACCCTGACGAGGCTCCAAAACAGAAGTTTCACTCATTTTGCAAAATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCGGTTCTGCGGAAGCATGCCACTGAGTGCCTGCTCCCATTGCATGGGCAACTGAGAGTTGGCGTTAGGCGTTTGGCTCGGCAGCAGAGTCCCATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTCATTGTTGGCTTGAATAAATATCTAGAGGCAGTCAACAATAAGTTTTCTGTCGGTATGCGTTTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAGAGAAGGTNTCCTTCTAAACAGTTATTGTGGTCAGAGTGTCACCTTCACTGCAAAATTGGTATTTATTACTGTGTAGTTATTTTGGTCAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTGTCTCAAGGATGGTCAAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCGGCAACGATTCCAAGGCCGGATAGAGTTTCCTCTTGGGAGATAGAGCCCTTTGTAGCTTCTCCTGCTTTGAATGTCACTCAACCAGTAGTGAAGGGCAAAAGGTCTAGGCCTACTGATGTTTCATCTTCTGGTAAGNGACCATTGTCCTTAGTTTTCTCAATGAAATGGTTTATTGACTCAACATTAATTGTATCTAAATATTATATTATTTCCTATTCAGCTGCTTCAGGTTTCTGGTATCAAGGGTCTTCCCAGGCTCATGAGCTTACCCAGATGGCTGGTGCTGCTGCTGAAGTCCAAAGCAAGGAAAATCAGATTGCATGCTCTCTGAGACAGAAAGACATTAATATTAGTCTCATTAATACTACTAACTCCAGCAGCACTAGAGTCCAGGTGGAAGGAAGAATATGGCCTTCTTCACCGCATTTGAATGTCACTTCCAACCTTTTTTCTGATGCCAAAANCAACAAAGGTGTCACAGCACAATCACCTCTCTCTGGTTATGCTAACATTGCATCTAGACCAAGTGACGGCCCCACANGCGATCGAGTGGAAGATGGGAAAAAGACCGAGAATCCCCTAGCTTGTTGGTTATTTGGAGTTAATTTGACTAACAAATCTAGCAGCAATGTTATTACTCCTTCAGAGAAAGAACTGGGGTGTCCAAGTCCAACTGTTGTTACTAGTGGTCCCAAAGAATCTATTCCTGCTGCAGCATGTGAAACAACTGAGAGGGTTCAGAAGCAAATTATTTCTGATGCATCACCAAATGAGTGGCAGAACAAGCAGACCTCTGTACCATCGATGAGGACGCGGACTAAGGTGCAAATGCAGGGTGTTGCTGTTGGTCGTGCTCTTGACTTGACCATGTTAAGTGGCTATGATGATCTCGTAGATGAGCTTGAGAAATTGTTTGCTATTAAAGGAGAGCTGCGTTCACAAAACAAATGGAGGGTTACTTTCACTGATAATGAAAATGACATAATGCTCGCCGGTGATGATCCGTGGCCGGAGTTCTGCAATATAGTGAAGAGGATTTACATTTGTTCAAAGGAGGACTTGAAGAAAATGAAATGCAAGCTACCTGCTTCTTCATCAGAGGTTGAAGAGACAATGTTGAGCCTAGATTCACAAAATAGGGATGAGATTNAACAATCTCACATACCTTGATAACTTAGCTCTTTATTTTATTTTTACCTTTTTTCGGGTTTGGGATGGGAGGGGGAAGGGTATCTGATGGTATGTGTTGCTTGATTTGATGGAACTTCTCACAACAACTTCAGAATAGTGGACTTGTTTAACTGGACTCATATATATATATATGAACTACAGGAAGTTGGATTTTAGGTGCTCTATATTTGTGAATACCCTCTTTTTTCTTGTTTGTTTTTTTTAGCCCTTACAGTACCATCAGTTTGTAAACAAGGATGCNTTTTCATCTCTAATGGATTGTTTGTCTGCATATATGTCACCTTGTTTTGCTAAATTTGTCTCTATACACATCTCAGTGTTTTGGGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00211	184436	189030	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000211s00017657.1	PF06507.8	Auxin_resp	142	198	2.00E-19
Glyur000211s00017657.1	PF02309.11	AUX_IAA	496	615	4.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.333
SRR1783600	control	3.282
SRR1783602	moderate drought stress	2.159
SRR1811619	moderate drought stress	2.136

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.000
DRR006520	Root Summer glycyrrhizin high producing strain	7.797
DRR006521	Root Winter glycyrrhizin high producing strain	2.626
DRR006522	Root Winter glycyrrhizin high producing strain	2.720
DRR006523	Root Summer glycyrrhizin low producing strain	9.650
DRR006524	Root Summer glycyrrhizin low producing strain	9.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.825
SRR2868004	Drought Stress (root)	39.807
SRR2967015	Control (root)	29.551

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.947
SRR9715740	Leaf	6.219
SRR9715741	Leaf	5.938
SRR9715739	Root	2.754
SRR9715742	Root	7.021
SRR9715743	Root	7.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.790
SRR8749028	MeJA induced 9h	0.840
SRR8749029	MeJA induced 9h	0.910
SRR8749030	Uninduced	0.533
SRR8749031	Uninduced	0.096
SRR8749032	Uninduced	0.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.719
SRR8400027	Control - Root	11.630