Gene detail information of Glyur000211s00017652 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46560.1 | 0 | transducin family protein / WD-40 repeat family protein |
| NR | XP_004510655.1 | 0 | PREDICTED: uncharacterized protein LOC101490119 isoform X1 [Cicer arietinum] |
| COG | NP_103505.1 | 8.00E-06 | transcriptional repressor [Mesorhizobium loti MAFF303099] |
| trEMBL | tr|K7KZU1|K7KZU1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G06025.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00211 | 151194 | 164859 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000211s00017652.1 | PF12234.3 | Rav1p_C | 1013 | 1458 | 5.90E-67 |
| Glyur000211s00017652.1 | PF00400.27 | WD40 | 2308 | 2333 | 0.032 |
| Glyur000211s00017652.1 | PF00400.27 | WD40 | 2479 | 2510 | 4.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.498 |
| SRR1783600 | control | 8.559 |
| SRR1783602 | moderate drought stress | 8.637 |
| SRR1811619 | moderate drought stress | 8.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.570 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.456 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.859 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.626 |
| SRR2868004 | Drought Stress (root) | 20.223 |
| SRR2967015 | Control (root) | 19.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.202 |
| SRR9715740 | Leaf | 6.551 |
| SRR9715741 | Leaf | 8.276 |
| SRR9715739 | Root | 2.159 |
| SRR9715742 | Root | 11.581 |
| SRR9715743 | Root | 9.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.054 |
| SRR8749028 | MeJA induced 9h | 5.765 |
| SRR8749029 | MeJA induced 9h | 3.346 |
| SRR8749030 | Uninduced | 1.490 |
| SRR8749031 | Uninduced | 1.586 |
| SRR8749032 | Uninduced | 1.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.093 |
| SRR8400027 | Control - Root | 16.248 |