Gene detail information of Glyur000211s00017650 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10840.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KEH18621.1 | 0 | kinesin light chain [Medicago truncatula] |
| COG | YP_003887368.1 | 5.00E-27 | hypothetical protein Cyan7822_2113 [Cyanothece sp. PCC 7822] |
| trEMBL | tr|A0A072TN22|A0A072TN22_MEDTR | 0 | Kinesin light chain {ECO:0000313|EMBL:KEH18621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00211 | 145170 | 149623 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000211s00017650.1 | PF13374.1 | TPR_10 | 115 | 143 | 0.043 |
| Glyur000211s00017650.1 | PF13424.1 | TPR_12 | 161 | 231 | 1.50E-09 |
| Glyur000211s00017650.1 | PF13424.1 | TPR_12 | 280 | 356 | 5.40E-13 |
| Glyur000211s00017650.1 | PF13424.1 | TPR_12 | 452 | 523 | 3.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.725 |
| SRR1783600 | control | 4.537 |
| SRR1783602 | moderate drought stress | 7.067 |
| SRR1811619 | moderate drought stress | 7.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.891 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.738 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.889 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.695 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.905 |
| SRR2868004 | Drought Stress (root) | 19.862 |
| SRR2967015 | Control (root) | 26.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.022 |
| SRR9715740 | Leaf | 6.083 |
| SRR9715741 | Leaf | 7.683 |
| SRR9715739 | Root | 3.349 |
| SRR9715742 | Root | 10.654 |
| SRR9715743 | Root | 8.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.479 |
| SRR8749028 | MeJA induced 9h | 4.732 |
| SRR8749029 | MeJA induced 9h | 3.735 |
| SRR8749030 | Uninduced | 6.489 |
| SRR8749031 | Uninduced | 1.377 |
| SRR8749032 | Uninduced | 1.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.140 |
| SRR8400027 | Control - Root | 10.275 |