Gene detail information of Glyur000211s00017640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27745.1 | 8.00E-37 | Yippee family putative zinc-binding protein |
| NR | KEH18611.1 | 1.68E-69 | yippee family zinc-binding protein, putative [Medicago truncatula] |
| Swissprot | tr|Q9T096|YIPL6_ARATH | 2.00E-46 | Protein yippee-like At4g27745 |
| trEMBL | tr|A0A072TN09|A0A072TN09_MEDTR | 6.00E-70 | Protein yippee-like {ECO:0000256|RuleBase:RU110713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00211 | 79435 | 80350 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000211s00017640.1 | PF03226.9 | Yippee-Mis18 | 10 | 101 | 5.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.826 |
| SRR1783600 | control | 2.710 |
| SRR1783602 | moderate drought stress | 2.098 |
| SRR1811619 | moderate drought stress | 1.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.841 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.871 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.287 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.871 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.881 |
| SRR2868004 | Drought Stress (root) | 46.034 |
| SRR2967015 | Control (root) | 32.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.893 |
| SRR9715740 | Leaf | 0.223 |
| SRR9715741 | Leaf | 0.432 |
| SRR9715739 | Root | 1.133 |
| SRR9715742 | Root | 1.421 |
| SRR9715743 | Root | 1.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.866 |
| SRR8749028 | MeJA induced 9h | 8.568 |
| SRR8749029 | MeJA induced 9h | 5.302 |
| SRR8749030 | Uninduced | 12.675 |
| SRR8749031 | Uninduced | 32.306 |
| SRR8749032 | Uninduced | 6.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.952 |
| SRR8400027 | Control - Root | 18.703 |