Gene detail

Gene detail information of Glyur000211s00017636

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G00900.1	ER-type Ca2+-ATPase 2
NR	XP_004510638.1	PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type-like isoform X1 [Cicer arietinum]
COG	YP_002509936.1	cation-transporting ATPase A [Halothermothrix orenii H 168]
Swissprot	tr\|Q42883\|ECAP_SOLLC	Calcium-transporting ATPase, endoplasmic reticulum-type
trEMBL	tr\|A0A072TP30\|A0A072TP30_MEDTR	Endoplasmic reticulum-type calcium-transporting ATPase {ECO:0000313\|EMBL:KEH18608.1}

Sequence

Transcript Sequence

>Glyur000211s00017636.1
GAAAGCATCAGATTCCAAAATTCTNTGTCAGAATTGTGAAGAGTCTCCCTTACCCCACAACAACAACAACAACACANTTTGTCTAAAGTTGTTCAAAGACAAGACTGGTCTTCAGTCTTCACAAGTTCCATTTCTTGGACAAAAGGTTTTCTCCACAAAAGCATCTGTGGAAAATTCCCTGCCTTATAGCTTTGCTTGGTTTCCAAGCTGACAAAACTTCAACGTTGTCTGCTCCTTCTAATGTTGTGAATTATAACACGCATATGAAAGTTCCAATGGAGGAAAAGCCATTCCCTGCATGGTCATGGTCAGTTGAGCAGTGCTTGAAGGAGTATGGTGTGAAACTGGAAAAGGGTCTGAGTACTCATGAAGTTCAGAAGCGGCGCGAGAAACACGGTTGGAATGAACTAGCAAAAGAGAAGGGAAAACCCTTGTGGGAACTAGTGTTAGAACAATTTGATGACATGTTGGTGAAGATACTCTTGGTTGCAGCCTTCATATCATTTCTTTTGGCTTATTTCCAAGGAAACGAATCGGGGGAGTCTGGATTCGAAGCTTACGTNGAGCCGCTCGTGATCGTTTTGATCTTAGTCCTTAATGCCATTGTTGGTGTTTGGCAAGAGAACAATGCTGAAAAGGCTCTTGAGGCTCTCAAAGAGTTGCAGTGTGAATCTGGAAAAGTTTTGAGGGACGGATGTTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCATGTTGGAGATAAAGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAAACCTCAACACTGAGAGTGGAGCAAAGTTCATTGACTGGAGAAGCAATGCCTGTTCTCAAAGGCACCAATCCTGTTTTCTTGGATGACTGTGAGTTGCAGGCAAAAGAAAACATGGTATTTGCAGGCACTACTGTTGTCAATGGGAGCTGTCTTTGTATTGTTATCACCACAGCAATGAACACTGAAATTGGAAAGATACAGAAGCAAATACATGAGGCTTCTCTGGAGGATAGTGATACTCCCTTGAAGAAGAAGCTGGATGAGTTTGGTGGCAGGCTTACCATTGCAATTGGACTAGTTTGCCTTGTTGTNTGGGTTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTTGATGGATGGCCCTCAAACATCCAATTCTCTTTTCAGAAGTGCACCTACTATTTCAAAATTGCTGTTGCCCTTGCTGTGGCTGCAATCCCAGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTTGGAACAAGGAAAATGGCACAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTGGAAACTCTGGGGTGTACTACTGTGATCTGTTCAGACAAAACTGGTACTCTCACAACAAATCAAATGTCNGTGACAGAGTTCTTTACTTTGGGAGGGAAAACCACCGCTTCTCGGGTCATTAGAGTTGAAGGCACAACTTATGATCCAAAGGATGGGGGCATTGTTGATTGGACTTGCTATAACATGGATGCTAACTTGTTAGCAATAGCAGAAATATGTGCTGTTTGTAATGATGCTGGTGTTTATTTCGATGGTCGCCTATTTCGAGCCACGGGTTTGCCTACTGAAGCTGCCCTCAAAGTTTTGGTTGAGAAGATGGGGGTTCCAGATGTGAAGTCAAGGAACAAAATTCGCGATGCACAAGTTGCTGCAAACAACAAGATGGCTTGCAACACTGTGAAGCTAGGCTGTTGTGAGTGGTGGAATAAAAGATCCAAAAGAGTAGCTACATTGGAGTTCGATCGCATTAGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAATGGAGAAAATCAGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGGTCCACTGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCATGAGATGAGTTCCAAGGGATTGCGTTGCTTGGGTTTGGCATACAAGGATGAGTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCCCACAAGAAATTGCTTGATCCAACATACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGTGTTGTTGGCTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGCAAGCTGGTATTAGAGTTATGGTGATAACTGGAGATAACAAGTCAACAGCTGAGGCTATTTGTAGGGAAATCAAATTGTTCTCTAGAGATGAGGATCTTACAGGTCAAAGTTTGACAGGTAAGGAATTCATGTCTCTTTCTCCTTCAGAACAAGTTAAAACATTGTTGAGACCTGGAGGCAAGGTTTTCTCTCGAGCCGAGCCTAGACACAAGCAAGAGATTGTGAGACTGCTGAAGGAAATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGCATAACAGGAACAGAGGTTGCAAAAGAAGCTTCAGATATGGTACTTGCAGATGACAATTTTAGTACCATCGTTTCAGCTATTGCTGAAGGTCGCTCTATTTATAATAACATGAAAGCATTTATTAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACAGCTGCTCTGGGGATCCCAGAATGCATGATACCAGTACAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAAAAGTGATGATGCTCTTATAAGTACTTGGGTTCTTTTCCGTTACCTAGTAATTGGTTCCTATGTGGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGTATCGATCTTGTTAGTGATGGGCACACAATTATAGAATTGTCTCAGCTTCTCAACTGGGGAGAGTGTCACTCATGGTCTAATTTCACTGTTGCTCCATTTGCTGTTGGTGGGGGTCGCTTGATCACATTTTCAGATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACTCTGTCTCTCTCTGTCTTGGTGGCAATTGAGATGTTCAATTCTTTGAATGCACTCTCAGAGGAGAACAGCTTGATGAAATTACCACCTTGGAGGAACCCTTGTCTTTTGGCAGCCATGTCAATATCACTNGGACTACATTGCCTCATACTCTACATCCCATTCCTAGCTGAGGTGTTTGGTGTTGCTCCACTTAGCTTGAATGAGTGGTTTTTGGTGATTCTTATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTGGNGGTAAGGAGTCAAAGGAGGAGGACAAAAGAGAAACAAGCATGATGAAGACTCAATCTCAGTTAATGGCCACCACATGCAATACAAGAGGGCTATGGGATGATGACACATGGTAGTATCAAGCCAAATTCTTTGATACCTTTTTTT

Protein Sequence

>Glyur000211s00017636.1
MKVPMEEKPFPAWSWSVEQCLKEYGVKLEKGLSTHEVQKRREKHGWNELAKEKGKPLWELVLEQFDDMLVKILLVAAFISFLLAYFQGNESGESGFEAYVEPLVIVLILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGCFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPVFLDDCELQAKENMVFAGTTVVNGSCLCIVITTAMNTEIGKIQKQIHEASLEDSDTPLKKKLDEFGGRLTIAIGLVCLVVWVINYKNFISWDVVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTASRVIRVEGTTYDPKDGGIVDWTCYNMDANLLAIAEICAVCNDAGVYFDGRLFRATGLPTEAALKVLVEKMGVPDVKSRNKIRDAQVAANNKMACNTVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGENQLLVKGAVESLLERSSHVQLADGSTVPIDDQCRELLLQRLHEMSSKGLRCLGLAYKDELGEFSDYYADTHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICREIKLFSRDEDLTGQSLTGKEFMSLSPSEQVKTLLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISTWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGIDLVSDGHTIIELSQLLNWGECHSWSNFTVAPFAVGGGRLITFSDPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLMKLPPWRNPCLLAAMSISLGLHCLILYIPFLAEVFGVAPLSLNEWFLVILISAPVILIDEILKLXVRSQRRRTKEKQA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00211	58256	63290	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000211s00017636.1	PF00690.21	Cation_ATPase_N	13	80	2.30E-21
Glyur000211s00017636.1	PF00122.15	E1-E2_ATPase	104	360	1.90E-63
Glyur000211s00017636.1	PF00702.21	Hydrolase	365	744	4.50E-31
Glyur000211s00017636.1	PF00689.16	Cation_ATPase_C	815	1040	9.10E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.107
SRR1783600	control	2.084
SRR1783602	moderate drought stress	1.612
SRR1811619	moderate drought stress	1.610

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.897
DRR006520	Root Summer glycyrrhizin high producing strain	2.802
DRR006521	Root Winter glycyrrhizin high producing strain	0.094
DRR006522	Root Winter glycyrrhizin high producing strain	0.092
DRR006523	Root Summer glycyrrhizin low producing strain	4.260
DRR006524	Root Summer glycyrrhizin low producing strain	4.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.712
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.591

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.235
SRR2868004	Drought Stress (root)	61.990
SRR2967015	Control (root)	47.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.631
SRR9715740	Leaf	5.778
SRR9715741	Leaf	7.741
SRR9715739	Root	1.831
SRR9715742	Root	8.637
SRR9715743	Root	6.784

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.058
SRR8749028	MeJA induced 9h	5.875
SRR8749029	MeJA induced 9h	3.376
SRR8749030	Uninduced	5.785
SRR8749031	Uninduced	5.547
SRR8749032	Uninduced	1.936

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.905
SRR8400027	Control - Root	18.825