Gene detail

Gene detail information of Glyur000211s00017631

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01200.1	8.00E-90	RAB GTPase homolog A3
NR	XP_003548240.1	4.48E-157	PREDICTED: ras-related protein RABA3-like isoform X1 [Glycine max]
COG	YP_008431664.1	3.00E-24	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q9LNK1\|RABA3_ARATH	2.00E-112	Ras-related protein RABA3
trEMBL	tr\|I1MKG1\|I1MKG1_SOYBN	2.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G02460.1}

Sequence

Transcript Sequence

>Glyur000211s00017631.1
GCTTCCACTACCCTCCAAGACCAACACTTAGACTAAGTTGTATTTTAACATGCTGGGGAAGACTAAGACCAAGGTCCAAGGTTTTAAAGCCTAGTTTTGTGCAAGAAGAACAGGCCCTATTGACCTGTTCTTTTTTTTTTTTTTTTTNNTTTTCTTTTTTCAAGGTGTTACTTGTCTTGTGAAGAAAATGAACCAGGAAATGCATAGGGTGGAGGCTGAGAAGAGGCAAGAGAATGGACATGAGAAAATATATTATGATGAGCAAGAGAGAGTAGATTATGTGTTTAAGGTGGTGGTGATTGGGGACTCAGCAGTGGGGAAGACTCAAATACTCTCAAGGTTTTCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAGTTCCAGACTAGGACTGTCACTATTAATGGCAAAGTAATCAAAGCCCAGATCTGGGATACTGCTGGTCAAGAAAGGTACAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTGGTGTATGACATAACTAAAAGACAATCATTTGATCATGTTGCTAGATGGGTTGAGGAACTGCAATCACATGCCGATAGCTCCATTGTGATCATGCTAGTTGGAAACAAAGGTGACCTTGTTGACCTGAGAGTGGTGCCCACTGAAGATGCAGTGGAGTTTGCAGAGGAGCAGGGCCTATTCTTCTCAGAGACTTCAGCTCTCACTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTATCTAAAAAGGCATTGGAATGTGATAATGGGAAAGGGAATGGTCACTATGATGCTGCCACACTCAAGGGGTCAAAGATAGATATAATCTCTGGTCCTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCTTGTTAATCTTGTTACTATGATCTCATCTAAGTTAGTGTATTTGATTTGAAGTTTGCAAAAGAAGGCAGAGTGAAAAGAATACATAATGGTGGGTGAGGCTGAATTGATTTCATCTGGTCTTGCTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00211	38306	39877	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000211s00017631.1	PF00071.17	Ras	34	194	2.80E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.615
SRR1783600	control	3.584
SRR1783602	moderate drought stress	2.051
SRR1811619	moderate drought stress	2.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.971
DRR006520	Root Summer glycyrrhizin high producing strain	14.244
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	8.773
DRR006524	Root Summer glycyrrhizin low producing strain	9.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.585
SRR2868004	Drought Stress (root)	4.371
SRR2967015	Control (root)	6.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.270
SRR9715740	Leaf	0.243
SRR9715741	Leaf	0.207
SRR9715739	Root	1.862
SRR9715742	Root	1.775
SRR9715743	Root	1.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.810
SRR8749028	MeJA induced 9h	0.193
SRR8749029	MeJA induced 9h	1.549
SRR8749030	Uninduced	0.769
SRR8749031	Uninduced	1.544
SRR8749032	Uninduced	0.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.527
SRR8400027	Control - Root	15.449