Gene detail

Gene detail information of Glyur000211s00017630

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46620.1	4.00E-155	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004510634.1	0	PREDICTED: uncharacterized protein LOC101511087 [Cicer arietinum]
COG	YP_007098995.1	3.00E-19	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|P85200\|PRS6B_HELAN	2.00E-10	26S protease regulatory subunit 6B homolog {ECO:0000250\|UniProtKB:P54778}
trEMBL	tr\|I1KHS5\|I1KHS5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05850.1}

Sequence

Transcript Sequence

>Glyur000211s00017630.1
ATGATTCCTTGCAATTGCAACCCCATATTCCTGGTTATCCTGGCTGCGCTCGTTTGTTTCGTGATTCGGTGGATGCTGTTCAAAACGGGATTGATATACGCGACGAAGAAACTCCACAGAAGGGTCCAAGATTGGTTCCACGTGTACCAGTTCCTCAAAGTCCCCGAATTAAACGACAGCATGCAGCAGAATCAGCTATACCGCAAGGTCTCCCTCTATTTGCATTCCCTNCCTTCCCTCGAAGACTCTGACTTCACGAACCTCATCACCGGGAGCAACAACCAAAACGACATCGTCCTCTCCCTCGACCCTAACCAAANCATCGAGGACCATTTCCTCGGGGCCACGCTCTTCTGGTCCAACCAAAAAACCGAACCGGACCGAACCGGTGCGTTCCTCCTCAAAATCAGAAAAGCCGATAAGCGCCGAATCCTCCGCCCCTATCTCCGCCACATCCACGCCGTCGCCGACGAGATTGAAAGCCAGGGGAAACGCGATTTGCGGCTGTTCATCAACACCGCCGTCGACGGCGGAATTCGGTGGAGGTCCGTTCCGTTCAATCACCCGGCGACGTTCGAGACCATGGCGATGGAAGAGGATCTCAAGAGCAGGATCAAATCGGACCTAGAGTCGTTCCTCAGAGCGAAGCAACACTACCGGCGACTCGGCCGTGCGTGGAAACGGAGCTTCCTTCTGTACGGTCCCTCCGGAACCGGTAAATCGAGCTTCGTCGCCGCCATGGCGAATTTCCTGTGCTACGACGTTTACGACGTGGACCTCTCCAAGGTTGGCGGCGATTCGGATTTGAAGTTGCTCCTACTCGAAACGACGGCGAAATCGATCATCGTCGTGGAGGACCTCGACCGGTTCCTGGCGGAGGAATCGCGATCGGCGGCGGTTACGATTCAGAACTTCATGGACGGGATTCTAAGCTCGTGCTGTGGGGAAGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAGAGTGTTGACCCGAACCTGCTTCGGCCGGGTCGGGTCGACGTGCACATCCAGTTCCCGGTTTGCGATTTCTCGGTGTTCAAGACGATGGCGAACAGTTACCTTGGGGTGAAGGAGCACAAGCTGTTCCCGCAGGTGGAGGAGATTTTCCGGCACGGAGCGAGTCTAAGCCCCGCCGAGATCGGCGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCCATTAAGTCGGTGATTGGGGCGCTCCAAACGGACGGTGATGGGAGGGGTTGTGGGGATGTGATCGGACGGCGGATAGGGGATGATGACGTGGATGAAAACCCCGAAGGGGTGGTGCTGTGTGGTGGGGATGGTTTCTCTGCGGTTAAGGATTTGCGGAAGTTGTACGGTTTGTTTAGATTGCGGAACGTCAAAAGAAATGGCTCCTCTAATGTCTTGGTCAACGAAAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00211	35155	36591	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000211s00017630.1	PF14363.1	AAA_assoc	33	124	3.80E-13
Glyur000211s00017630.1	PF00004.24	AAA	231	347	5.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.652
SRR1783600	control	11.674
SRR1783602	moderate drought stress	15.426
SRR1811619	moderate drought stress	15.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	121.437
DRR006520	Root Summer glycyrrhizin high producing strain	120.748
DRR006521	Root Winter glycyrrhizin high producing strain	5.530
DRR006522	Root Winter glycyrrhizin high producing strain	5.461
DRR006523	Root Summer glycyrrhizin low producing strain	179.144
DRR006524	Root Summer glycyrrhizin low producing strain	186.188
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.251

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.367
SRR2868004	Drought Stress (root)	57.160
SRR2967015	Control (root)	237.723

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	245.761
SRR9715740	Leaf	198.893
SRR9715741	Leaf	215.884
SRR9715739	Root	609.922
SRR9715742	Root	620.156
SRR9715743	Root	614.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	292.523
SRR8749028	MeJA induced 9h	221.884
SRR8749029	MeJA induced 9h	286.181
SRR8749030	Uninduced	222.165
SRR8749031	Uninduced	255.228
SRR8749032	Uninduced	210.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.270
SRR8400027	Control - Root	44.414