Gene detail

Gene detail information of Glyur000210s00014466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08290.1	8.00E-60	nodulin MtN21 /EamA-like transporter family protein
NR	KEH42562.1	0	auxin-induced 5NG4-like protein [Medicago truncatula]
COG	YP_003436885.1	1.00E-06	hypothetical protein Ferp_2503 [Ferroglobus placidus DSM 10642]
Swissprot	tr\|Q9SUF1\|WTR31_ARATH	4.00E-72	WAT1-related protein At4g08290
trEMBL	tr\|A0A072VL53\|A0A072VL53_MEDTR	0	Auxin-induced 5NG4-like protein {ECO:0000313\|EMBL:KEH42562.1}

Sequence

Transcript Sequence

>Glyur000210s00014466.1
ATGACTCACAAAGAACATGCATTTGAGTTGATATTAGTNACATATAGGAAATTCAAGCCTCACCTTCTCATGGTTCTTATTCAGATGGCTGTTACATTTCTTTATTTTCTAATAGAGGCTTCATTTAGCAAAGGCATGAACCCTCATGTCTTTGTTACTTACCGTCAAGCTGTTGGTGGTATAGTGATATTTCCTTTTGCTTATGTTCTTGAAAGAAGTGAGAAGCATTTTGACATTACAAGTGTTGGCCTTCAGAATATGGACATGTTTGATTTTCTTCTTTTCAGAGAAGCAAGGCCAAAGTTGACGATGCCAATGTTCTTGGAGCTATTCATTCTTTCCCTCACAGGGACCAGTCTTGCCCCAAACATGTATTTTGCAAGTTTGAAATATACCTCTCCTTCCTTTGTTGCATCCATGGTCAACATAATTTCATCTCTGATATTTGTCATTGCAGTTGCACTTAGGTTGGAGGATGTTGACGTTAAGAACCCTCGTGGGGTAGCTAAAATTATTGGAACCATACTATCATTGACCGGTGCCTTGACCATGGCTTTGTATAAAGGACATGCAATACATAGCTTGCAGGGTGCCCCATTCCATATCAGAGCCAAATTTGTTCATAAAAATTGGATCAAAGGATCAATTTTGGCTGTTGCAAGTTGCATATCATGGTCTTTATGGTACATAATGCAGGCAATGATAGTGAAGAAATATCCAGCACAACTATCACTAAGCGCGTGGATTAATTTGATCGGTGCAGCACAGTCTGCTGTCTTTACTGTAATTGTGCAACACAAGCCTAAAGCTTGGTTGGTTACGTCTAGTATCGAACTCTGTTGCATATTTTATGCAGGAGTTGTATGTTGTGGCTTGATGATCTTCATTCAAATATGGACAATGGAACAAAAAGGGCCAGTGTTCGTGAGCATGTTTAATCCCCTTGGAACAGTTTTGGTGGCAATCCTATCATATTTTGTTTTNGGGGAACAACTTCACATTGGCAGTGTATTGGGAGGATTCCTTGTTATAATTGGCCTNTACTTGCTGCTGTGGGGAAAAGAAAGTGATCGAGATTACAAGAGTTCTTCACAACAACGATCTTCTTCCACACACATTGAACAAAAAGAATGCAGGACACATGCAGAGACTTCTTCAGCANAACATGAATTATCATAGAAGAGATGTTGAAAGTAGAATTTGGTGAATCTATCAAGNTATTATTTATCTTGATGAACAATTGAACTAATCGGCACAATTATGCATATATATATTTGTAAGAGACTATAAACTGGACATTAACCCTGTGTTTGTTAAAAGAGAAATGGGAAAGAGAGAAGTAGAGAAGAGAGAATGAGAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00210	241914	244657	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000210s00014466.1	PF00892.15	EamA	34	182	4.80E-06
Glyur000210s00014466.1	PF00892.15	EamA	223	351	2.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.108
SRR1783600	control	4.422
SRR1783602	moderate drought stress	2.370
SRR1811619	moderate drought stress	2.405

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.306
DRR006520	Root Summer glycyrrhizin high producing strain	2.092
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.673
DRR006524	Root Summer glycyrrhizin low producing strain	2.519
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.342
SRR2868004	Drought Stress (root)	3.020
SRR2967015	Control (root)	2.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.509
SRR9715742	Root	0.045
SRR9715743	Root	0.491

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.220
SRR8400027	Control - Root	6.236