Gene detail information of Glyur000210s00014464 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06150.2 | 2.00E-133 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003553489.1 | 0 | PREDICTED: transcription factor EMB1444-like [Glycine max] |
| Swissprot | tr|P0C7P8|LHWL1_ARATH | 3.00E-171 | Transcription factor EMB1444 |
| trEMBL | tr|K7MYP0|K7MYP0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 219286 | 226572 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000210s00014464.1 | PF14215.1 | bHLH-MYC_N | 5 | 166 | 6.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.750 |
| SRR1783600 | control | 10.709 |
| SRR1783602 | moderate drought stress | 16.117 |
| SRR1811619 | moderate drought stress | 15.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.648 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.378 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.475 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.901 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.349 |
| SRR2868004 | Drought Stress (root) | 81.599 |
| SRR2967015 | Control (root) | 96.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.276 |
| SRR9715740 | Leaf | 7.910 |
| SRR9715741 | Leaf | 7.198 |
| SRR9715739 | Root | 2.541 |
| SRR9715742 | Root | 32.520 |
| SRR9715743 | Root | 26.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.463 |
| SRR8749028 | MeJA induced 9h | 4.977 |
| SRR8749029 | MeJA induced 9h | 1.866 |
| SRR8749030 | Uninduced | 1.967 |
| SRR8749031 | Uninduced | 0.467 |
| SRR8749032 | Uninduced | 0.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.635 |
| SRR8400027 | Control - Root | 51.590 |