Gene detail information of Glyur000210s00014461.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58190.1 | 3.00E-47 | lateral organ boundaries-domain 29 |
| NR | KHN02521.1 | 2.12E-112 | LOB domain-containing protein 29 [Glycine soja] |
| Swissprot | tr|Q9M2J7|LBD29_ARATH | 3.00E-68 | LOB domain-containing protein 29 |
| trEMBL | tr|I1N9P6|I1N9P6_SOYBN | 8.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 198748 | 199561 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000210s00014461.1 | PF03195.9 | DUF260 | 7 | 107 | 1.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.054 |
| SRR1783602 | moderate drought stress | 1.003 |
| SRR1811619 | moderate drought stress | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.164 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.776 |
| SRR2868004 | Drought Stress (root) | 1.418 |
| SRR2967015 | Control (root) | 0.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.049 |
| SRR9715740 | Leaf | 0.660 |
| SRR9715741 | Leaf | 0.109 |
| SRR9715739 | Root | 0.136 |
| SRR9715742 | Root | 0.414 |
| SRR9715743 | Root | 0.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.923 |
| SRR8749028 | MeJA induced 9h | 18.557 |
| SRR8749029 | MeJA induced 9h | 18.538 |
| SRR8749030 | Uninduced | 2.353 |
| SRR8749031 | Uninduced | 0.659 |
| SRR8749032 | Uninduced | 1.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.994 |
| SRR8400027 | Control - Root | 0.904 |