Gene detail information of Glyur000210s00014458 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42430.1 | 6.00E-44 | lateral organ boundaries-domain 16 |
| NR | XP_003521280.1 | 1.75E-110 | PREDICTED: LOB domain-containing protein 16-like [Glycine max] |
| Swissprot | tr|Q9SLB7|LBD16_ARATH | 8.00E-76 | LOB domain-containing protein 16 |
| trEMBL | tr|I1JP22|I1JP22_SOYBN | 7.00E-111 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G31830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 183332 | 184560 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000210s00014458.1 | PF03195.9 | DUF260 | 24 | 124 | 9.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.355 |
| SRR1783600 | control | 0.475 |
| SRR1783602 | moderate drought stress | 0.257 |
| SRR1811619 | moderate drought stress | 0.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.304 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.151 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.153 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.505 |
| SRR2868004 | Drought Stress (root) | 2.132 |
| SRR2967015 | Control (root) | 0.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.005 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.372 |
| SRR9715742 | Root | 0.264 |
| SRR9715743 | Root | 0.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.339 |
| SRR8749028 | MeJA induced 9h | 7.664 |
| SRR8749029 | MeJA induced 9h | 5.616 |
| SRR8749030 | Uninduced | 0.518 |
| SRR8749031 | Uninduced | 0.458 |
| SRR8749032 | Uninduced | 0.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.275 |
| SRR8400027 | Control - Root | 2.345 |