Gene detail

Gene detail information of Glyur000210s00014457.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31320.1	0	poly(ADP-ribose) polymerase 2
NR	XP_004493762.1	0	PREDICTED: poly [ADP-ribose] polymerase 1-like [Cicer arietinum]
COG	YP_001547522.1	6.00E-17	Poly(ADP-ribose) polymerase catalytic subunit [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9ZP54\|PARP1_ARATH	0	Poly [ADP-ribose] polymerase 1
trEMBL	tr\|A0A072U2F3\|A0A072U2F3_MEDTR	0	Poly(ADP-ribose) polymerase domain protein {ECO:0000313\|EMBL:KEH23887.1}

Sequence

Transcript Sequence

>Glyur000210s00014457.1
ATTAACTAATACGAGAAAAGCCACATATATAACAAACAGGAGGGAAGAAGAGTGAGAGTGAGAGTGTGAGACAATGTCGAACCCTCAAGATCAAAAGCCATGGAAAGCAGAGTACGCGAAGTCTGGGCGATCGTCATGCCGGACCTGCAAGAGCCCTATTTCCAGCGAGAGCCTCCGTCTCGGCAAGATGGTCCAATCCACCAAATTCGANGGCCTCATGCCCATGTGGAATCATGCTGCTTGCATATTGAAGAAATCCAACCAGATAAAATCAATTGATGATGTTGAAAACATAGAGCTGCTTCGTTGGGAAGATCAGNAGAAGATCAGAAAATACATAGAGAGCGGAGGTGGGCCTCCAAAGTCGAATGCCGTCAAAGATACTGAATGTGGTATTGAGGCTTCGCAAACTTCCCGTGCTACTTGCAGGCATTGTGGTCAAAAAATTATCAAAGGAGAGGTTCGCATATCTACTAAGCCTGATGGTCAAGGTGCTAGGAGTTTGGCTTGGCACCATGCCAAATGTTTCATGGAACTATCACCATCAATTCAAGTGGATAAGTTGTCTGGATGGAATGGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTGGCTAAGAAGGGCCGTCCTATGAATAAAGGAGATGGTAGTGGTGCAAATGTCAAGGCTGAAGAGGTTAAAGAATCCACACAACAATCCTCTTCCAAAGGATCCACAAAACGGGGGAAGGATGCCAATGGTGAACATAAGTCAAAAGTTGCTAAGGTCAAGGGAGATGTGTCTGTGGGCAGGGCAGCATCAATGAAAAATGTTGATGACTCAGGGGAAGCAGGTGATCTTGAGAATAGACTGGAGGCCCAGAGCAAAGAGCTCTGGGCTCTGAAGGATGATCTCAAAAAGCATGTGACAACAGCAGAGTTGCGTGAAATGCTGGAAATCAACGGTCAAGATTCAACTGGATCAGAACTTGATTTGCGCGATCGCTGTGCTGATGGAATGATGTTTGGAGGACTTGGCCATTGTCCACTGTGTTCTGGCTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCACTGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCAATGAACCAAAACGTGCTGAAGGGAAGTGGAAAATCCCAGAGGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCCGCCATCATCAAGGAATTCTGCTGAAAGTCAAATTACTGCATCCCAACATCAATCATCAAACAGTGAAAGTTTGGGAGATTTGAAAGTTGCCATCTCTGGGTTTCCTAAGGATTCTTTTGAGGAATGGAAACGCAGAATTGATGGCATAGGTGGGGTGTTTCATGCAAAAGTGAAGAAAGATACTAACTGCTTGGTGGTCAGTGGAGCGCTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTACAGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATCAAAGTGAAGGGGCACAGTGCTGTTCATGAGGCTTCGGGCCTACAGGATTCTGGCCACATACTAGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACCGGTGTTAACAGCTACTACATTCTTCAAATAATTGAAGAAGATAAGGGGTCAGGTTGTTATGTGTTCCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAATGAAACTGGATGAAATGTCGAAATCTGATGCAATCCGTGAATTCAAACGANTATTCTTTGAGAAAACTGGAAACCCTTGGGAGGCTTGGGAACAAAAGACAATTCAGAAGCAACCTGGAAGATTCTTCCCACTGGATATTGACTATGGAGTTAACAAACAGGTCTCAAAAAAGAATAAAAACAATGTGGACAGCAAACTACCCCCTCCATTAATAGAATTGATGAAGATGCTCTTTAATGTGGAGACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATTCAAAAGGGGTTTGAAGCATTAACAGATATACAGAATCTGTTAAGTATTAGCAATCCTGATCCATCAGTCAGGGAAAGCTTGCTTGTTGATGCTAGCAATCGGTTCTTCACTATGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGACAGTGAAGATTTTTGTTTAATTAAGAAGTTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAATTTGACAAGTTTGNTCCTTACAGGGACAAACTTGGCAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCTGCAACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTCGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTCTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCTGAAGGGAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGGTGATGTCACTGTTCCATGTGGCAAGCCAGTGCCATCTAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTTTATGATACTGCCCAAGTTAAAATGCAATTTTTGTTGAAGGTGAAGTTCTGTCACAAGAAATAAGGATTGGAAACTAGAGGTGCACTGTTTTGGGTTATCATCTGTACGAAGCAGTTTTTTGACCAGGACTTGTACATAGTCCATCTGGGATTCTCTTAAATTCTCATGGTAAGGTCTCATTTTGAGTGACTGCAGATCTTTCAACCTTTTTTTTTTTGGCGTGTTTGTAAGTGCAGGGATCTAGTTGAAACTCGTGACTTTGAGTAGAAATCTCTCATGCAAGATCTGGTTATGTGTATATAGAACTGCTATTTTAATATCAAAC

Protein Sequence

>Glyur000210s00014457.1
MSNPQDQKPWKAEYAKSGRSSCRTCKSPISSESLRLGKMVQSTKFXGLMPMWNHAACILKKSNQIKSIDDVENIELLRWEDQXKIRKYIESGGGPPKSNAVKDTECGIEASQTSRATCRHCGQKIIKGEVRISTKPDGQGARSLAWHHAKCFMELSPSIQVDKLSGWNGLSSSDQSAVSDLAKKGRPMNKGDGSGANVKAEEVKESTQQSSSKGSTKRGKDANGEHKSKVAKVKGDVSVGRAASMKNVDDSGEAGDLENRLEAQSKELWALKDDLKKHVTTAELREMLEINGQDSTGSELDLRDRCADGMMFGGLGHCPLCSGFLRYSGGMYRCTGYISEWSKCSYSTNEPKRAEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPPPSSRNSAESQITASQHQSSNSESLGDLKVAISGFPKDSFEEWKRRIDGIGGVFHAKVKKDTNCLVVSGALNDEAEMRKARRMKIPIVREDYLVDCTERKKKLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGVNSYYILQIIEEDKGSGCYVFRKWGRVGNDKIGGMKLDEMSKSDAIREFKRXFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKNKNNVDSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLSISNPDPSVRESLLVDASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIKKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFXPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGDVTVPCGKPVPSNVKASELMYNEYIVYDTAQVKMQFLLKVKFCHKK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00210	172396	180328	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10798	PARP	EC:2.4.2.30	Base excision repair	map03410
			Apoptosis	map04210
			Apoptosis - fly	map04214
			Longevity regulating pathway - worm	map04212

Gene Ontology

biological_process
GO:0006471 protein ADP-ribosylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003950 NAD+ ADP-ribosyltransferase activity

GO:0008270 zinc ion binding

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000210s00014457.1	PF00645.13	zf-PARP	13	89	4.70E-22
Glyur000210s00014457.1	PF00645.13	zf-PARP	109	181	6.90E-17
Glyur000210s00014457.1	PF08063.7	PADR1	302	354	4.10E-21
Glyur000210s00014457.1	PF00533.21	BRCT	413	482	2.20E-05
Glyur000210s00014457.1	PF05406.10	WGR	533	613	5.40E-16
Glyur000210s00014457.1	PF02877.9	PARP_reg	647	778	1.00E-34
Glyur000210s00014457.1	PF00644.15	PARP	780	992	7.10E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.828
SRR1783600	control	29.083
SRR1783602	moderate drought stress	38.963
SRR1811619	moderate drought stress	38.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.940
DRR006520	Root Summer glycyrrhizin high producing strain	33.873
DRR006521	Root Winter glycyrrhizin high producing strain	3.553
DRR006522	Root Winter glycyrrhizin high producing strain	3.406
DRR006523	Root Summer glycyrrhizin low producing strain	20.240
DRR006524	Root Summer glycyrrhizin low producing strain	20.231
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.465
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.013
SRR2868004	Drought Stress (root)	27.374
SRR2967015	Control (root)	39.676

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.699
SRR9715740	Leaf	2.374
SRR9715741	Leaf	2.242
SRR9715739	Root	4.514
SRR9715742	Root	20.215
SRR9715743	Root	16.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.244
SRR8749028	MeJA induced 9h	17.944
SRR8749029	MeJA induced 9h	15.560
SRR8749030	Uninduced	1.682
SRR8749031	Uninduced	1.520
SRR8749032	Uninduced	3.170

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.811
SRR8400027	Control - Root	45.957