Gene detail information of Glyur000210s00014454 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07705.1 | 6.00E-26 | NOT2 / NOT3 / NOT5 family |
| NR | KHN33423.1 | 5.49E-47 | Putative NOT transcription complex subunit VIP2 [Glycine soja] |
| Swissprot | tr|Q52JK6|VIP2_NICBE | 4.00E-25 | Probable NOT transcription complex subunit VIP2 (Fragment) |
| trEMBL | tr|I1LR28|I1LR28_SOYBN | 5.00E-45 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G07970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 163505 | 165062 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.446 |
| SRR1783600 | control | 1.098 |
| SRR1783602 | moderate drought stress | 2.032 |
| SRR1811619 | moderate drought stress | 1.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.091 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.203 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.130 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.763 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.266 |
| SRR2868004 | Drought Stress (root) | 3.695 |
| SRR2967015 | Control (root) | 3.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.023 |
| SRR9715740 | Leaf | 0.074 |
| SRR9715741 | Leaf | 0.108 |
| SRR9715739 | Root | 0.814 |
| SRR9715742 | Root | 0.066 |
| SRR9715743 | Root | 0.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.776 |
| SRR8749028 | MeJA induced 9h | 0.442 |
| SRR8749029 | MeJA induced 9h | 0.136 |
| SRR8749030 | Uninduced | 1.450 |
| SRR8749031 | Uninduced | 0.384 |
| SRR8749032 | Uninduced | 0.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.101 |
| SRR8400027 | Control - Root | 9.845 |