Gene detail

Gene detail information of Glyur000210s00014440

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30620.1	1.00E-24	winged-helix DNA-binding transcription factor family protein
NR	XP_004493754.1	4.42E-44	PREDICTED: histone H1-like [Cicer arietinum]
Swissprot	tr\|P26569\|H12_ARATH	3.00E-44	Histone H1.2
trEMBL	tr\|A0A061DR21\|A0A061DR21_THECC	4.00E-41	Winged-helix DNA-binding transcription factor family protein {ECO:0000313\|EMBL:EOX94551.1}

Sequence

Transcript Sequence

>Glyur000210s00014440.1
ACACACCAAAAAATTCGCTTTGAGCTACGTTCTTCANAGATCTATCAATTCATATCCAACCTCCGTTTTTCCCAGCGATGGCGTCGGAAGAGCCCACCGTGGTCGTGGAAGAGGCCGTACCGGAGGAGCCGGTAGCCGACGCTGCCAACCCACCGGAAGAGGAGAATGATCAGGCCANGCCCGCTGCAAAGCCCAAAAAGGCACCCAAGGAGCCCAAGCCCAAGAAGCCCGCTGCTCCCAGATCCCGTAACCCTCCTACTCATCCTCCCTACGAAGAGATGATCAAGGACGCGATTGTTTCGCTGAAGGAGAAAACTGGTTCGAGCCAGTATGCGATTGCCAAGTTCCTTGAGGAGAAGCACAAGCAGCTTCCCTCGAACTTCAGGAAGCTTCTCTTGTACCATTCCAAGAAGCTTGTTGCTTCTGGAAAGCTTGTTAAGGTCAAGGGATCCTTCAAGATGCCACCGGTGAAGTCTTCTGCTCCCAAGCCTGCTGCGGTGAAGAAGAAGNCCGCAACAGCTGCCAAGCCCAAGCCCAAGCCAAAAGCAGCTCCTAAGGCTAAGCCGACCAAAACAACCAAGTCTCCCGCTGCTAAGGCACCTGCCAAGGCTAAGCCCGTGGCCAAGCCCAAGTCAAAGCCTGCTGCCAAGCCCAAGGCGGCTGCCAAGCCCAAAGCTGCTCCAGCTAAGGCTAAGGCGAAANCAGTGGCTGCTGTAAAGCCGAAGCCCGCTGCTAAGCCCAAGGCTGCTGCTGCCAAGGCGAAACCCGTTGCTGCTGCAAAGCCCAAGGCTGCTGCAAAGCCTAAGGCAAGGCCCGCCAAGGCTTCTAGGACTTCGACGAGAACATCACCAGGGAAGAAAGCCCCTGCTCCGAAACCTGCGCCGAAGAAGGCTGCTCCTGCAAAGAAAGCTCCTGCGAAGAGTGCGAAGCCCAAGAGTGTGAAGTCGCCGGCGAAGAAGGCGACGACGGCGAGGAGGGGGAGGAAGTGAAGTTTGGGGGGTAATTGGAGACTAGTGTTTGTAGGGTTAGTCCTGTAAAGTTATTTGTCCTTGCGGTGTAGTTCGATCACAGATGTTGCCGAAAACAACATGAATTCTGATTTTATCAAACCTTTTTTCTTTTTCTTTTTCTTTTTTCTCTTTTGGGTACACAGGTTTCTAGCATGTAATTTTCACCTTAATGAGTTAATCATAAATGAAGCTTAGAATTGGAGAGTTTTTTACNTAGTAGTGTTTTTTTCCCAGTGTNGGATTAGTTGTGTTATATGCAGCCTTTTCCAAATGGAATGAATCCGCAGTTGTTGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00210	93172	94593	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000210s00014440.1	PF00538.14	Linker_histone	61	129	1.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	291.420
SRR1783600	control	292.664
SRR1783602	moderate drought stress	243.811
SRR1811619	moderate drought stress	242.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.648
DRR006520	Root Summer glycyrrhizin high producing strain	119.766
DRR006521	Root Winter glycyrrhizin high producing strain	99.665
DRR006522	Root Winter glycyrrhizin high producing strain	97.661
DRR006523	Root Summer glycyrrhizin low producing strain	112.565
DRR006524	Root Summer glycyrrhizin low producing strain	113.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.632
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	210.617
SRR2868004	Drought Stress (root)	169.698
SRR2967015	Control (root)	172.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	94.263
SRR9715740	Leaf	80.156
SRR9715741	Leaf	74.334
SRR9715739	Root	333.572
SRR9715742	Root	190.953
SRR9715743	Root	206.629

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.489
SRR8749028	MeJA induced 9h	126.019
SRR8749029	MeJA induced 9h	114.508
SRR8749030	Uninduced	94.131
SRR8749031	Uninduced	44.952
SRR8749032	Uninduced	48.901

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	222.658
SRR8400027	Control - Root	191.945