Gene detail information of Glyur000210s00014432 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30550.2 | 7.00E-157 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_004493749.1 | 0 | PREDICTED: phospholipase A1-Igamma2, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | YP_008088318.1 | 2.00E-06 | Predicted lipase [Chthonomonas calidirosea T49] |
| Swissprot | tr|Q3EBR6|PLA16_ARATH | 0 | Phospholipase A1-Igamma2, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U3F4|A0A072U3F4_MEDTR | 0 | Phospholipase A1 {ECO:0000313|EMBL:KEH23856.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 22642 | 28078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000210s00014432.1 | PF01764.20 | Lipase_3 | 213 | 373 | 4.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.845 |
| SRR1783600 | control | 7.008 |
| SRR1783602 | moderate drought stress | 4.875 |
| SRR1811619 | moderate drought stress | 5.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.104 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.051 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.390 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.690 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.217 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.953 |
| SRR2868004 | Drought Stress (root) | 1.625 |
| SRR2967015 | Control (root) | 2.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 97.239 |
| SRR9715740 | Leaf | 20.158 |
| SRR9715741 | Leaf | 36.359 |
| SRR9715739 | Root | 5.915 |
| SRR9715742 | Root | 15.854 |
| SRR9715743 | Root | 14.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.358 |
| SRR8749028 | MeJA induced 9h | 0.717 |
| SRR8749029 | MeJA induced 9h | 0.541 |
| SRR8749030 | Uninduced | 0.112 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.330 |
| SRR8400027 | Control - Root | 2.100 |