Gene detail

Gene detail information of Glyur000210s00014429.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23050.1	3.00E-62	indole-3-acetic acid 7
NR	AFK36086.1	9.93E-114	unknown [Lotus japonicus]
Swissprot	tr\|P13089\|AUX28_SOYBN	8.00E-112	Auxin-induced protein AUX28
trEMBL	tr\|I3S744\|I3S744_LOTJA	4.00E-114	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000210s00014429.1
CTATAGTATACTCCCTTTTCATTCTCACCACTACTATACTATTAATTATTGGCACATAGCAAACAAAACCATCGCTGAATTAATGCTTAGAGAGNGAAACAGAGGTGATTTTAGACAGAGAAAGAGTGATAAAGTGATTGATAGATAGATATAGCTAGATAAGAGAGAGTGAATAAAATTAAGATCACTGACTAGTGATGGATCAGAAGGAGAAGATGGGGTTTGAGGAAACTGAGCTGAGGCTTGGAATTGGATTGCCTGCTGGGAAAGGAGGAGGAGGCACAGCCACAGCCACTCATGAAGAAGTGGTGATGAGGAAGAGAGGATTCTCTGAGACTGAGACTGAGACTGAGACAGTAACCACAGTGGATTTGATGCTTAATCTCTCCTCTAAGGAGACTTCTCCTACTCTTACTGCTGGGGCAGATCCAACTCATGATGTTAAGCCCAACAGTGCTTTGCCTAAGGAGAAGACCNTTTTGCCTGCAGATCCTGCCAAGCCTCCTGCCAACGTTGGAGATCAGGATCAGAGCGACAAGAGCAACGGCAGTCCCAATGCAGCAGCAGCAAGCTTTGTCAAAGTCAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAACTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGCAATTGTGAATCTCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTTTTGAACAGTTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGCCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTACTAGTCGTACCAAGTCACAACCTGCTTCCATCCTTTGTAATTGTTGTGCCTCTCGTTGGCTTAGCAACTAAAGCACAGATAATCAAGCTGCAGCAGAAACGAATGGACATAGCAGGATATTATGTTATAGTTAATTTGTGTATTGTTATGGTTTGTTATATAATGTTTCAAACAAAACAATGAGAGTCTAAGAACTAATTAGGAACTGAAACAATAACGACGACTCTAAATTATGTTGTTAGACTTGGCTTTCTTATATATCTATATCTTTGTTTGCTTAGTGTGTTTGCTTGCTTAATAATAAAAAAATGTATTCACATTTTTCGCTGGTTAGTGCAAATGTTCCCTGAACATGGTGGATGGGGAAACAAGAACATGTGCTTGTTCATGGAGTATTTATGCATGCNAATTGAAATAGATTCTTTAATTATTATTATATTCCATCTGAGATATTGCTGTCTAATTTTATGCAAAAATATAAATAGAGATGCGTTGGTCAAACTTTATAAACTGATTTGGAAAAGCATCAAAACGCATTAATCGGCCCTCATTTAATTTATGGTGGCATTTTCGGATAGATTTTTGGTGATAGCTACTAGCTGGATTGGGGATTAACAGAAATTCTGATTATGATATTTGAAATTCTGTTTGTATAAGGAATAACAGATTTAACTCGATGAAAAATCACAACTTTTATTAGACATCCTTCTAAAGTTATAATACTCTCCTTGGGCAGTTGGGCTCTGACTTTGCACAAACTGCAGATTCCTCAGAAATCAACTGACTTGATTATTGTATCAGCATTTTTCTTGGACNTCATTATAAGTTCTGCATTGAGCCTGTCGTTGTTCTCTATCTGCATTATGAAATTTAGTGTTGCATGTATGCGTGTGAGTGTGTGACTCGTTGTCAACAAAATAGGTCAAATAATAGTCAGATAATCAGAAAAACAAATAAACATCACAAGTTAAAAGATGTGAAGTTTACCCGCAGCTTAGCAATGTCTGGGGGCTTGCCTATAGATAGAGAGGGAAAAGAAAATCACATGCAAATTTAAAATGCCTTACCTAATAATAATTATTATGGAAAAGTACATGGTAAATACCAGTTGAAATATGCCTCTTTAAAACTCGCTGCATTGCTTTGTCAATGTCAATATCAATAAACCTTGAAAANAACAGGAACAAACAAATTAGACAAACTGTATCCCTGATAATTCTCTCATGTTGAAAAGCAGAAATTGCCCTCGGATTAGGTTGCATATTTCTTGATAGATATAAAGCGCTATTTCTACAGATTTTGAAACTGCGAATGCAAGTGCCATATCACAACAATAATCAGTAGACCCGGTCTCATAGGTTGTGATCTCTTCTGGTCTGAAACACAGTGCAAGTTATGCCCCTTTTAAAGTGTCCCTTATTAACAAGAGGGATGGACNTCATAAGCCACAATGTCGAGAAATAGAACAGTACTCAGAGAATTAGTGAACTCTTTCAAGAAAATAATGCACCAGAAAGGCTACTGATAGTCATGCCAAAACAATTAAAGTCAGAATACAAATAACTCTAAGCAAAGTTAGTAGGGGACTAATGACTNGAACATGTATTAGGTAAATAATATATACTGCAGAATGAGAAAATGGCAAACAAAAGTTTATAGTGTCACATTGATATTTTTTGCAAGTTAAACCAGTGAAGGCTAGGCCAAGTGTTGGATTTATAGGGAAAAAATGAGATATGAGCCTCAAAGTGAATCAATGCATCTATTTAATCCCATGGAACCTCTATCTTCTAAGGCTTTGAAAATCAAAAACCTAGTAAAAAATAACACTGATGACATATTCCCAGCATGAAACAAGCAAAAGCTAATGATCACCTGAATGTGGTTCAGTAAACATAACATTTGTTTTCCATAAATATAATTTTCATGGCAGAATTTTTTACCNGAATCATAGGCTCACAGCTGAATTTTCATAAGAGAGTTCACACACAACTTTCAAAACTTCAAGACCAATGGGAAAATATAAGAAACATGTGCCTCAGTAAAAACCAGTACTTGCCATTTCTCATCAAACAAAGATGATATCTCCTTCCATACCCCATCTTCCAAGAGCAAATAGTTACCTTCTACAATAACAACTTTGTGCCTACATAAAGGAAGTTAACAAAGGAATCTGTTCAGGCAGTAAGTATCAACGTAACAAAAAAAAAGCTGACAATGAGCAAGCAGCACTAGCAACTACTTGAAAAATCTGGAGATAATTGGCTAAATTTTATTTTCTGNCTTGTTCATGATGCCATTTGTCTTTTTTGAGTGTTAACTATTCATCATTTACTTTTGTTCAATATATATCATGTTTTGTGACAAAAATTAATAAAATGCTGACAAGTGGGCCACATCTTAATGTTAAGATACTCACTGAAGGTTCACAAAGATATCATCTTCCACTGGGTCCCCAACACCATGGTCAAAAGATGGTGCATAAACTGATCCCTGAAGAATTATGTTTCACCAAAAAGCAGTTAAGAACTCCATCAATGTCAATGCACAAATCGTAACAGTNTTTTCTGTGCATCCCAGGTTTACCATTATTTGAGAGAAAAAAGGGGGTCACGGTCAAATGAACAAATAACAATTCTAAGTTTCCAAGCCATGCAAAATGATGATGGTGGTGGTGATGATGATGATAAAATAAATAAATAAAACCATTAGATCTTAAAAAACTTAATAAACCTTACATGAATTCTTAGATTCTTGAGACACATAAGTAGTCGCAAGGGATTGAATGTCCATGGAGCTGACGTACCAATCGAAAGATTAATGCCTTTTGTATGAATACGGTGTCTGAAATTGATGGGTAATATGAAGAGGTACCTTACCTCCCCTTCTGGCATGTGCTTCCTTGGGATTCTATTGTCAAAAAGATCACTAAGAATGTCAGAATTATGATTCCCCATGACAATAAGTAAGGACTCTAGTTCATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00210	1584	8643	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000210s00014429.1	PF02309.11	AUX_IAA	7	234	9.10E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.462
SRR1783600	control	23.673
SRR1783602	moderate drought stress	30.465
SRR1811619	moderate drought stress	30.583

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.383
DRR006520	Root Summer glycyrrhizin high producing strain	31.505
DRR006521	Root Winter glycyrrhizin high producing strain	2.157
DRR006522	Root Winter glycyrrhizin high producing strain	2.199
DRR006523	Root Summer glycyrrhizin low producing strain	43.710
DRR006524	Root Summer glycyrrhizin low producing strain	44.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.673
SRR2868004	Drought Stress (root)	12.870
SRR2967015	Control (root)	10.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.698
SRR9715740	Leaf	7.576
SRR9715741	Leaf	10.595
SRR9715739	Root	5.533
SRR9715742	Root	22.447
SRR9715743	Root	20.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.761
SRR8749028	MeJA induced 9h	5.054
SRR8749029	MeJA induced 9h	8.445
SRR8749030	Uninduced	4.873
SRR8749031	Uninduced	3.836
SRR8749032	Uninduced	5.821

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.305
SRR8400027	Control - Root	34.715