Gene detail information of Glyur000209s00013483 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54880.1 | 8.00E-16 | |
| NR | XP_004496227.1 | 8.43E-22 | PREDICTED: uncharacterized protein LOC101501047 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072VNV4|A0A072VNV4_MEDTR | 6.00E-22 | DUF4050 family protein {ECO:0000313|EMBL:KEH43477.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 217419 | 221888 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000209s00013483.1 | PF13259.1 | DUF4050 | 5 | 44 | 2.10E-12 |
| Glyur000209s00013483.2 | PF13259.1 | DUF4050 | 32 | 137 | 2.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.343 |
| SRR1783600 | control | 10.808 |
| SRR1783602 | moderate drought stress | 6.326 |
| SRR1811619 | moderate drought stress | 6.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.737 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.546 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.889 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.482 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.373 |
| SRR2868004 | Drought Stress (root) | 13.638 |
| SRR2967015 | Control (root) | 14.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.095 |
| SRR9715740 | Leaf | 29.357 |
| SRR9715741 | Leaf | 23.115 |
| SRR9715739 | Root | 0.497 |
| SRR9715742 | Root | 3.110 |
| SRR9715743 | Root | 2.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.387 |
| SRR8749028 | MeJA induced 9h | 5.663 |
| SRR8749029 | MeJA induced 9h | 3.986 |
| SRR8749030 | Uninduced | 14.096 |
| SRR8749031 | Uninduced | 7.531 |
| SRR8749032 | Uninduced | 2.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.996 |
| SRR8400027 | Control - Root | 16.218 |