Gene detail

Gene detail information of Glyur000209s00013482

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54940.2	7.00E-148	Papain family cysteine protease
NR	XP_004496226.1	0	PREDICTED: cysteine proteinase 15A-like [Cicer arietinum]
COG	YP_504536.1	2.00E-28	peptidase C1A, papain [Methanospirillum hungatei JF-1]
Swissprot	tr\|P43295\|A494_ARATH	7.00E-143	Probable cysteine proteinase A494 (Precursor)
trEMBL	tr\|A0A072VPA6\|A0A072VPA6_MEDTR	0	Papain family cysteine protease {ECO:0000313\|EMBL:KEH43476.1}

Sequence

Transcript Sequence

>Glyur000209s00013482.1
GGGCAAGGCCAAACTCGTCATTACACGATCCATGTCCGATGGAAGATAACACCGCGTAAAAAGCGAGCGAGTAGCAAACAGAGAGAGCTAGGCACCACCAACGGCACAACAAAGATGGAGACGAAACCAACAGTCACGGCTCTCACGTGTTGTGCACGTGTCACAATCTTCCTATGCGCCTTAACACTGTCAACCGCTCTCCACCATGGAACGGAAACCTTGATTGAGGACGTAGCGAGAAAGCTCAACCTGAAGGACAATGAGCTTCTGAGCACGGAGAAGAGGTTCAAGACTTTCATGGAGAACTACGGGAAGCGGTATTCCACGAGGGAAGAGTACCTCCTACGACTTGGGATTTTCGCAAAGAACATGCTCAGAGCCACGGAGCACCAGGCATTCGACCCCACCGCCACCCACGGCGTCACGCAGTTCTCCGACCTCTCCGAGGACGAGTTTGAGCGCTTCTACACCGGCGTCAAAGGCGGCTTCCCCTCCGGTAATTCATCCGGCGGGGAAGCGCCGCCGTTGGATTTGGAAGGCCTGCCGGAGAATTTCGATTGGAGAGAGAAAGGGGCGGTTACTGAAGTCAAGATGCAGGGGAGATGTGGATCTTGCTGGGCTTTTAGCACTACAGGATCTATAGAAGGAGCCAATTTTGTTGCCACCGGCAAGCTCCTCAATCTTAGTGAACAACAGCTGGTGGACTGTGACAACAAGTGTGACATAACAGAGAAGACATCATGTGACAATGGTTGTAATGGAGGTCTAATGACAAATGCCTATAATTATTTGATTGAGGCTGGTGGGTTGGAAGAGGAGTCTTCATACCCTTACACTGGGGATCGAGGTGAATGCAAGTTTGATCCAAAGAAAATAGCAGTTAGAATCACAAATTTCACCAATATCCCTGTGGATGAGAACCAAATTGCTGCATACTTAGTTAAACATGGTCCACTTGCGATGGGAATAAATGCGGTTTTCATGCAAACTTACATTGGTGGTGTCTCATGCCCTCTCATCTGTAGCAAGAGATTGCTCAACCATGGTGTGTTGCTAGTGGGGTATGGTGAAAAAGGCTTCTCCATTCTCAGGCTTCGCAACAAACCGTATTGGATCATCAAGAATTCATGGGGGAAGCAATGGGGAGAAAATGGATATTACAAGCTTTGCCGAGGGCATGGTATGTGTGGAATGAACACAATGGTCTCTACTGCAATGGTGACTCAAACACAACCTGCAGCTACAGACAAATTATATGCTTCCTATTAAGCTAGCAATTCTGCTATCTTGCCTCGTTATGGAGATAAAAAAAAGTGTGTGAATCGCTATAAGTTCTGATACACTATAGCAAATCGAAATATTTTCTTTAGTAGGTGATNTGTATGTAAAGTAAAAGACTTTACCCGCATTATAATAAGTACGCATCTCCACGTTGGTCTTCTTTAATTAGTTTAAGTTCCCTCTTTAAGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	211656	215133	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01373	CTSF	EC:3.4.22.41	Lysosome	map04142
			Apoptosis	map04210

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013482.1	PF08246.7	Inhibitor_I29	58	114	5.40E-12
Glyur000209s00013482.1	PF00112.18	Peptidase_C1	143	367	4.90E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.025
SRR1783600	control	0.025
SRR1783602	moderate drought stress	0.026
SRR1811619	moderate drought stress	0.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.146
DRR006520	Root Summer glycyrrhizin high producing strain	0.142
DRR006521	Root Winter glycyrrhizin high producing strain	11.115
DRR006522	Root Winter glycyrrhizin high producing strain	10.853
DRR006523	Root Summer glycyrrhizin low producing strain	21.957
DRR006524	Root Summer glycyrrhizin low producing strain	21.866
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.251
SRR2868004	Drought Stress (root)	0.068
SRR2967015	Control (root)	0.104

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.091
SRR9715740	Leaf	0.043
SRR9715741	Leaf	0.044
SRR9715739	Root	0.099
SRR9715742	Root	0.166
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.434
SRR8749028	MeJA induced 9h	0.174
SRR8749029	MeJA induced 9h	0.206
SRR8749030	Uninduced	0.179
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.036

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.326
SRR8400027	Control - Root	0.270