Gene detail information of Glyur000209s00013480 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KEH43475.1 | 3.34E-23 | hypothetical protein MTR_1g094130 [Medicago truncatula] |
| Swissprot | tr|Q9FS16|EXTN3_ARATH | 3.00E-10 | Extensin-3 (Precursor) |
| trEMBL | tr|A0A078EAX7|A0A078EAX7_BRANA | 6.00E-24 | BnaA07g31240D protein {ECO:0000313|EMBL:CDX96513.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 203836 | 204507 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 274.763 |
| SRR1783600 | control | 273.853 |
| SRR1783602 | moderate drought stress | 75.267 |
| SRR1811619 | moderate drought stress | 75.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.140 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.494 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.486 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.405 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2370.018 |
| SRR2868004 | Drought Stress (root) | 1387.613 |
| SRR2967015 | Control (root) | 1549.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.094 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 296.784 |
| SRR9715742 | Root | 127.200 |
| SRR9715743 | Root | 143.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 189.224 |
| SRR8749028 | MeJA induced 9h | 177.297 |
| SRR8749029 | MeJA induced 9h | 266.042 |
| SRR8749030 | Uninduced | 79.750 |
| SRR8749031 | Uninduced | 100.667 |
| SRR8749032 | Uninduced | 128.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 342.067 |
| SRR8400027 | Control - Root | 362.774 |